Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010801.1-P | Field mustard | nucleus | 72.24 | 74.93 |
| CDX99879 | Canola | mitochondrion | 75.06 | 73.74 |
| Bra032355.1-P | Field mustard | nucleus | 75.06 | 73.55 |
| CDY63845 | Canola | nucleus | 65.55 | 72.86 |
| CDY26298 | Canola | nucleus | 74.29 | 72.43 |
| CDX90224 | Canola | nucleus | 64.78 | 71.39 |
| Solyc09g055670.1.1 | Tomato | cytosol | 11.31 | 70.97 |
| CDX98180 | Canola | mitochondrion | 30.59 | 65.75 |
| PGSC0003DMT400096244 | Potato | mitochondrion | 32.39 | 52.94 |
| Solyc10g074800.1.1 | Tomato | nucleus, plastid | 42.42 | 50.61 |
| PGSC0003DMT400071236 | Potato | nucleus, plastid | 42.67 | 50.3 |
| AT5G01970.1 | Thale cress | mitochondrion, nucleus | 43.19 | 47.86 |
| VIT_08s0056g00430.t01 | Wine grape | nucleus | 50.39 | 45.9 |
| KRH40636 | Soybean | nucleus | 48.33 | 45.08 |
| KRH00520 | Soybean | nucleus | 48.07 | 44.1 |
| Zm00001d010455_P013 | Maize | plastid | 41.13 | 42.78 |
| KRH64858 | Soybean | nucleus | 40.1 | 40.84 |
| Os05t0315200-01 | Rice | plasma membrane | 43.96 | 40.81 |
| AT2G30530.1 | Thale cress | nucleus | 38.3 | 40.16 |
| KRH09568 | Soybean | nucleus | 38.56 | 39.16 |
| PGSC0003DMT400071259 | Potato | extracellular, golgi | 19.28 | 38.66 |
| GSMUA_Achr3P09690_001 | Banana | mitochondrion | 40.62 | 37.35 |
| TraesCS1D01G124900.2 | Wheat | nucleus | 41.39 | 37.18 |
| TraesCS1A01G128300.1 | Wheat | cytosol, plastid | 40.62 | 36.49 |
| GSMUA_Achr8P21430_001 | Banana | mitochondrion | 42.16 | 35.96 |
| OQU77734 | Sorghum | nucleus, plastid | 26.48 | 35.15 |
| TraesCS1B01G146700.2 | Wheat | mitochondrion | 41.39 | 35.08 |
| AT4G02800.1 | Thale cress | nucleus | 21.59 | 25.23 |
Protein Annotations
| ArrayExpress:AT1G30050 | EMBL:DQ132672 | EnsemblPlants:AT1G30050.1 | EnsemblPlantsGene:AT1G30050 | EntrezGene:839884 | GO:GO:0008150 |
| ncoils:Coil | PANTHER:PTHR31016 | PANTHER:PTHR31016:SF6 | ProteinID:AAG52052.1 | ProteinID:AEE31172.1 | RefSeq:AT1G30050 |
| RefSeq:AT1G30050-TAIR-G | RefSeq:NP_174297.1 | SEG:seg | TAIR:AT1G30050 | TAIR:AT1G30050.1 | Unigene:At.51832 |
| UniParc:UPI00000A7D33 | UniProt:Q9C8R6 | MapMan:20.2.4.4 | : | : | : |
Description
Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
Coordinates
chr1:+:10543022..10544594
Molecular Weight (calculated)
43337.1 Da
IEP (calculated)
5.920
GRAVY (calculated)
-0.815
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.