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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY23991 Canola plastid 66.31 76.64
Bra022806.1-P Field mustard plastid 65.5 72.32
CDX84826 Canola plastid 65.77 72.19
Bra021640.1-P Field mustard nucleus 38.01 67.79
CDY29667 Canola cytosol 19.68 62.93
Solyc09g055590.2.1 Tomato nucleus 29.11 56.84
Zm00001d010455_P013 Maize plastid 48.25 47.86
VIT_06s0004g08310.t01 Wine grape mitochondrion 53.64 47.38
KRH30689 Soybean nucleus 52.56 45.77
Os05t0315200-01 Rice plasma membrane 50.67 44.87
KRG98088 Soybean nucleus 52.56 44.42
OQU77734 Sorghum nucleus, plastid 34.77 44.03
TraesCS1D01G124900.2 Wheat nucleus 50.4 43.19
TraesCS1A01G128300.1 Wheat cytosol, plastid 49.6 42.49
TraesCS1B01G146700.2 Wheat mitochondrion 49.87 40.3
GSMUA_Achr3P09690_001 Banana mitochondrion 45.01 39.48
GSMUA_Achr8P21430_001 Banana mitochondrion 48.52 39.47
AT5G01970.1 Thale cress mitochondrion, nucleus 36.93 39.03
AT1G30050.1 Thale cress nucleus 40.16 38.3
AT4G02800.1 Thale cress nucleus 21.83 24.32
Protein Annotations
MapMan:20.2.4.4EntrezGene:817602UniProt:A0A178VKY5ProteinID:AAB63084.1ProteinID:AEC08404.1ArrayExpress:AT2G30530
EnsemblPlantsGene:AT2G30530RefSeq:AT2G30530TAIR:AT2G30530RefSeq:AT2G30530-TAIR-GEnsemblPlants:AT2G30530.1TAIR:AT2G30530.1
EMBL:AY052678EMBL:AY063732Unigene:At.14722ncoils:CoilRefSeq:NP_565700.1UniProt:O04342
ProteinID:OAP07110.1PO:PO:0000005PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281
PANTHER:PTHR31016PANTHER:PTHR31016:SF3UniParc:UPI00000AA154SEG:seg::
Description
At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
Coordinates
chr2:+:13008856..13011066
Molecular Weight (calculated)
41217.2 Da
IEP (calculated)
5.414
GRAVY (calculated)
-0.748
Length
371 amino acids
Sequence
(BLAST)
001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.