Factsheet for Solyc09g055590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g055670.1.1
Solyc10g074800.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30530.1	Solyc09g055670.1.1	AT5G01970.1	21798944
AT2G30530.1	Solyc10g074800.1.1	AT5G01970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g055670.1.1	Tomato	cytosol	20.0	61.29
CDY29667	Canola	cytosol	26.32	43.1
Bra021640.1-P	Field mustard	nucleus	37.37	34.13
CDY23991	Canola	plastid	56.32	33.33
Solyc10g074800.1.1	Tomato	nucleus, plastid	55.79	32.52
Bra022806.1-P	Field mustard	plastid	55.79	31.55
CDX84826	Canola	plastid	55.79	31.36
Zm00001d010455_P013	Maize	plastid	57.89	29.41
AT2G30530.1	Thale cress	nucleus	56.84	29.11
VIT_06s0004g08310.t01	Wine grape	mitochondrion	63.16	28.57
Os05t0315200-01	Rice	plasma membrane	58.42	26.49
KRG98088	Soybean	nucleus	60.0	25.97
KRH30689	Soybean	nucleus	57.89	25.82
GSMUA_Achr3P09690_001	Banana	mitochondrion	55.79	25.06
GSMUA_Achr8P21430_001	Banana	mitochondrion	57.89	24.12
TraesCS1A01G128300.1	Wheat	cytosol, plastid	54.74	24.02
TraesCS1D01G124900.2	Wheat	nucleus	54.74	24.02
TraesCS1B01G146700.2	Wheat	mitochondrion	55.26	22.88
OQU77734	Sorghum	nucleus, plastid	32.11	20.82
Solyc06g008980.2.1	Tomato	nucleus	33.68	19.28

Protein Annotations

EnsemblPlants:Solyc09g055590.2.1	EnsemblPlantsGene:Solyc09g055590.2	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF3	SEG:seg
UniParc:UPI000276AF5F	UniProt:K4CT56	MapMan:20.2.4.4	:	:	:

Description

No Description!

Coordinates

chr9:-:42260108..42263972

Molecular Weight (calculated)

21461.4 Da

IEP (calculated)

4.775

GRAVY (calculated)

-0.545

Length

190 amino acids

Sequence
(BLAST)

001: MSGTHQQPLL RAHMQPQTQA DLETQLKASR DVAMAMAAKA KLILRELKTV KADLAFAKER CAQLEEENRI LRESSEKGGS PEDDDLIRLQ LETLLAEKAR
101: LGQENSVLTR ENRFLREIVE YHQLTMQDVV YLNENSEEVT EVYPIKVVSS QVTKDNSSPV SSLETKYVSC DITSLSSFIQ TPAEDELGRH

Best Arabidopsis Sequence Match ( AT5G01970.1 )
(BLAST)

001: MAYRRRQGIG KFATFKEEVD RLPPESITAV KDRSPPARSS PAFDQPRSKN FTTEPKGLWG VIAQKAKSVI EDDKSSDRST TASQSRFSYL SDEGFKKMDN
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S

Arabidopsis Description

Heat-inducible transcription repressor [Source:UniProtKB/TrEMBL;Acc:Q9LZN4]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.