Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g097100.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G01970.1 | Solyc03g097100.1.1 | AT3G03000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98180 | Canola | mitochondrion | 66.13 | 22.65 |
| Solyc09g055590.2.1 | Tomato | nucleus | 61.29 | 20.0 |
| Bra005657.1-P | Field mustard | mitochondrion | 50.0 | 19.75 |
| PGSC0003DMT400096244 | Potato | mitochondrion | 74.19 | 19.33 |
| Solyc10g074800.1.1 | Tomato | nucleus, plastid | 69.35 | 13.19 |
| CDY63845 | Canola | nucleus | 70.97 | 12.57 |
| CDX90224 | Canola | nucleus | 70.97 | 12.46 |
| AT5G01970.1 | Thale cress | mitochondrion, nucleus | 69.35 | 12.25 |
| Zm00001d010455_P013 | Maize | plastid | 72.58 | 12.03 |
| Bra010801.1-P | Field mustard | nucleus | 70.97 | 11.73 |
| KRH64858 | Soybean | nucleus | 70.97 | 11.52 |
| AT1G30050.1 | Thale cress | nucleus | 70.97 | 11.31 |
| KRH09568 | Soybean | nucleus | 69.35 | 11.23 |
| CDX99879 | Canola | mitochondrion | 70.97 | 11.11 |
| Bra032355.1-P | Field mustard | nucleus | 70.97 | 11.08 |
| CDY26298 | Canola | nucleus | 70.97 | 11.03 |
| Os05t0315200-01 | Rice | plasma membrane | 72.58 | 10.74 |
| CDY11165 | Canola | cytosol | 3.23 | 10.53 |
| TraesCS1A01G128300.1 | Wheat | cytosol, plastid | 70.97 | 10.16 |
| TraesCS1D01G124900.2 | Wheat | nucleus | 70.97 | 10.16 |
| GSMUA_Achr3P09690_001 | Banana | mitochondrion | 67.74 | 9.93 |
| VIT_08s0056g00430.t01 | Wine grape | nucleus | 67.74 | 9.84 |
| KRH40636 | Soybean | nucleus | 64.52 | 9.59 |
| TraesCS1B01G146700.2 | Wheat | mitochondrion | 70.97 | 9.59 |
| KRH00520 | Soybean | nucleus | 64.52 | 9.43 |
| GSMUA_Achr8P21430_001 | Banana | mitochondrion | 69.35 | 9.43 |
| CDY11166 | Canola | cytosol | 19.35 | 7.59 |
| Solyc06g008980.2.1 | Tomato | nucleus | 40.32 | 7.53 |
| OQU77734 | Sorghum | nucleus, plastid | 1.61 | 0.34 |
Protein Annotations
| EnsemblPlants:Solyc09g055670.1.1 | EnsemblPlantsGene:Solyc09g055670.1 | PANTHER:PTHR31016 | PANTHER:PTHR31016:SF6 | UniParc:UPI000276AF67 | UniProt:K4CT64 |
| MapMan:20.2.4.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:43551055..43551243
Molecular Weight (calculated)
7332.8 Da
IEP (calculated)
6.511
GRAVY (calculated)
-0.492
Length
62 amino acids
Sequence
(BLAST)
(BLAST)
1: MDLKLQIRVQ LETLLAEKGR LAHENSVYAR ENHFLREIVE YHQLHMQVVV YQDEGIQAGN TR
001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV
Arabidopsis Description
Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.