Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G01970.1 | KRH25249 | AT3G03000.1 | 21798944 |
| AT5G01970.1 | KRH30413 | AT3G03000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH00520 | Soybean | nucleus | 89.93 | 88.44 |
| Solyc09g055670.1.1 | Tomato | cytosol | 9.59 | 64.52 |
| CDX98180 | Canola | mitochondrion | 24.46 | 56.35 |
| AT5G01970.1 | Thale cress | mitochondrion, nucleus | 45.8 | 54.42 |
| Bra005657.1-P | Field mustard | mitochondrion | 19.18 | 50.96 |
| PGSC0003DMT400096244 | Potato | mitochondrion | 29.02 | 50.84 |
| Solyc10g074800.1.1 | Tomato | nucleus, plastid | 38.61 | 49.39 |
| VIT_08s0056g00430.t01 | Wine grape | nucleus | 50.36 | 49.18 |
| PGSC0003DMT400071236 | Potato | nucleus, plastid | 38.85 | 49.09 |
| AT1G30050.1 | Thale cress | nucleus | 45.08 | 48.33 |
| KRH09568 | Soybean | nucleus | 44.36 | 48.3 |
| CDY63845 | Canola | nucleus | 40.29 | 48.0 |
| CDX99879 | Canola | mitochondrion | 45.32 | 47.73 |
| KRH64858 | Soybean | nucleus | 43.65 | 47.64 |
| CDX90224 | Canola | nucleus | 39.81 | 47.03 |
| CDY26298 | Canola | nucleus | 44.84 | 46.87 |
| Bra032355.1-P | Field mustard | nucleus | 44.6 | 46.85 |
| Bra010801.1-P | Field mustard | nucleus | 41.73 | 46.4 |
| Zm00001d010455_P013 | Maize | plastid | 40.53 | 45.19 |
| KRH30689 | Soybean | nucleus | 43.65 | 42.72 |
| KRG98088 | Soybean | nucleus | 44.36 | 42.14 |
| Os05t0315200-01 | Rice | plasma membrane | 41.73 | 41.53 |
| CDY11166 | Canola | cytosol | 15.35 | 40.51 |
| PGSC0003DMT400071259 | Potato | extracellular, golgi | 18.47 | 39.69 |
| OQU77734 | Sorghum | nucleus, plastid | 27.58 | 39.25 |
| TraesCS1D01G124900.2 | Wheat | nucleus | 40.05 | 38.57 |
| GSMUA_Achr3P09690_001 | Banana | mitochondrion | 39.09 | 38.53 |
| TraesCS1A01G128300.1 | Wheat | cytosol, plastid | 39.57 | 38.11 |
| GSMUA_Achr8P21430_001 | Banana | mitochondrion | 40.29 | 36.84 |
| CDY11165 | Canola | cytosol | 1.68 | 36.84 |
| TraesCS1B01G146700.2 | Wheat | mitochondrion | 40.53 | 36.82 |
| KRH67202 | Soybean | nucleus, plastid | 19.42 | 24.62 |
| KRG95525 | Soybean | nucleus, plastid | 19.42 | 23.82 |
Protein Annotations
| EMBL:ACUP02006044 | EnsemblPlants:KRH40636 | EnsemblPlantsGene:GLYMA_09G271300 | ncoils:Coil | PANTHER:PTHR31016 | PANTHER:PTHR31016:SF6 |
| ProteinID:KRH40636 | ProteinID:KRH40636.1 | SEG:seg | UniParc:UPI0002338D4D | UniProt:I1L6W8 | MapMan:20.2.4.4 |
Description
hypothetical protein
Coordinates
chr9:+:48804373..48808179
Molecular Weight (calculated)
46365.7 Da
IEP (calculated)
6.271
GRAVY (calculated)
-0.850
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRRRQGIS KSSTFKEEFH DPSLEDDNAS PSIFSSSSTP PPSSLAAQAI KAAASRREPS LSFAFAPAEF DHQRSKSFGA YGNGNSKSGG FWGVIAQKAK
101: SILDDDKPTP QHDTMPQTQT LKSHSFNTFS DPSAVQNSPS QFKPGYESLD SSRKMDNPKF RKGLDKITSS LNQLGDTFEK AFEEGRTIVG SKTADLRTQI
201: RRKGSNFGDT NQTSDLRNPF QEADQTQTQS SHETKLKASR DVAMATAAKA KLLLRELKSV KADLAFAKAR CAQLEEENKV LRDREGSDKG QNREDDDLIR
301: HQLETLLAEK ARLASENEKY SRENRFLREI VEYHQLTMQD VVYIDEGMEE VNEVYPVDDS RITRLLSVSP HSSDEDVLVS PSPPMLSKEI FTVPEEDSKS
401: ISKDGAPSTV SVSPHTK
101: SILDDDKPTP QHDTMPQTQT LKSHSFNTFS DPSAVQNSPS QFKPGYESLD SSRKMDNPKF RKGLDKITSS LNQLGDTFEK AFEEGRTIVG SKTADLRTQI
201: RRKGSNFGDT NQTSDLRNPF QEADQTQTQS SHETKLKASR DVAMATAAKA KLLLRELKSV KADLAFAKAR CAQLEEENKV LRDREGSDKG QNREDDDLIR
301: HQLETLLAEK ARLASENEKY SRENRFLREI VEYHQLTMQD VVYIDEGMEE VNEVYPVDDS RITRLLSVSP HSSDEDVLVS PSPPMLSKEI FTVPEEDSKS
401: ISKDGAPSTV SVSPHTK
001: MAYRRRQGIG KFATFKEEVD RLPPESITAV KDRSPPARSS PAFDQPRSKN FTTEPKGLWG VIAQKAKSVI EDDKSSDRST TASQSRFSYL SDEGFKKMDN
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S
Arabidopsis Description
Heat-inducible transcription repressor [Source:UniProtKB/TrEMBL;Acc:Q9LZN4]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.