Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G01970.1 | KRH25249 | AT3G03000.1 | 21798944 |
| AT5G01970.1 | KRH30413 | AT3G03000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g055670.1.1 | Tomato | cytosol | 11.23 | 69.35 |
| KRH64858 | Soybean | nucleus | 68.93 | 69.11 |
| CDX98180 | Canola | mitochondrion | 26.11 | 55.25 |
| Solyc10g074800.1.1 | Tomato | nucleus, plastid | 40.73 | 47.85 |
| PGSC0003DMT400071236 | Potato | nucleus, plastid | 40.99 | 47.58 |
| PGSC0003DMT400096244 | Potato | mitochondrion | 29.5 | 47.48 |
| Bra005657.1-P | Field mustard | mitochondrion | 19.32 | 47.13 |
| KRH40636 | Soybean | nucleus | 48.3 | 44.36 |
| KRH00520 | Soybean | nucleus | 47.52 | 42.92 |
| VIT_08s0056g00430.t01 | Wine grape | nucleus | 46.21 | 41.45 |
| CDY63845 | Canola | nucleus | 37.6 | 41.14 |
| CDX90224 | Canola | nucleus | 37.34 | 40.51 |
| AT5G01970.1 | Thale cress | mitochondrion, nucleus | 37.08 | 40.46 |
| Bra010801.1-P | Field mustard | nucleus | 39.43 | 40.27 |
| AT1G30050.1 | Thale cress | nucleus | 39.16 | 38.56 |
| KRH30689 | Soybean | nucleus | 42.82 | 38.5 |
| CDY11166 | Canola | cytosol | 15.67 | 37.97 |
| Zm00001d010455_P013 | Maize | plastid | 37.08 | 37.97 |
| KRG98088 | Soybean | nucleus | 43.08 | 37.59 |
| Bra032355.1-P | Field mustard | nucleus | 38.64 | 37.28 |
| CDY26298 | Canola | nucleus | 38.64 | 37.09 |
| CDY11165 | Canola | cytosol | 1.83 | 36.84 |
| CDX99879 | Canola | mitochondrion | 37.86 | 36.62 |
| Os05t0315200-01 | Rice | plasma membrane | 37.6 | 34.37 |
| GSMUA_Achr3P09690_001 | Banana | mitochondrion | 37.6 | 34.04 |
| PGSC0003DMT400071259 | Potato | extracellular, golgi | 16.97 | 33.51 |
| GSMUA_Achr8P21430_001 | Banana | mitochondrion | 38.38 | 32.24 |
| TraesCS1D01G124900.2 | Wheat | nucleus | 35.77 | 31.64 |
| TraesCS1A01G128300.1 | Wheat | cytosol, plastid | 35.51 | 31.41 |
| OQU77734 | Sorghum | nucleus, plastid | 23.24 | 30.38 |
| TraesCS1B01G146700.2 | Wheat | mitochondrion | 36.29 | 30.28 |
| KRG95525 | Soybean | nucleus, plastid | 18.54 | 20.88 |
| KRH67202 | Soybean | nucleus, plastid | 17.49 | 20.36 |
Protein Annotations
| EMBL:ACUP02010283 | EnsemblPlants:KRH09568 | EnsemblPlantsGene:GLYMA_16G221500 | EntrezGene:100816878 | ncoils:Coil | PANTHER:PTHR31016 |
| PANTHER:PTHR31016:SF6 | ProteinID:KRH09568 | ProteinID:KRH09568.1 | SEG:seg | UniParc:UPI000233C01C | UniProt:I1MQQ4 |
| MapMan:20.2.4.4 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr16:-:37826460..37828478
Molecular Weight (calculated)
42493.5 Da
IEP (calculated)
6.585
GRAVY (calculated)
-0.755
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRRRHGIS RASTFKEEVH PDHDNANDPT PLPSLSSSFS FTPSSSSSLA AQAIKASAAR RDPSLSFTFP KSEHDQHHRS KSFDAYGDVS KSGVWGVLAK
101: KAKEILEDDK SSPQHNNVVN IKPVVDIDKL KSHSFNTFAP NKAAGDHRTP IKLKEISPDQ SNQTAADTWN PWQQPDQTGG GGASQTIHET QLKASRDVAM
201: ATAAKAKLLL RELKTVKADL AFSKARSAQL EEENKMLRDR EGTDKGQNVT RADDDLIRLQ LETLLAEKGR LASENEVYAR ENRFLREIVE YHQLTMQDLV
301: YLDEGMEEVT EIYPLDTTGT VVPRVLPKSP RSPLSRGGSH TKSFFSVPQI LEQEQENNVT SELDEAPPSI DISVSVSKDQ HAK
101: KAKEILEDDK SSPQHNNVVN IKPVVDIDKL KSHSFNTFAP NKAAGDHRTP IKLKEISPDQ SNQTAADTWN PWQQPDQTGG GGASQTIHET QLKASRDVAM
201: ATAAKAKLLL RELKTVKADL AFSKARSAQL EEENKMLRDR EGTDKGQNVT RADDDLIRLQ LETLLAEKGR LASENEVYAR ENRFLREIVE YHQLTMQDLV
301: YLDEGMEEVT EIYPLDTTGT VVPRVLPKSP RSPLSRGGSH TKSFFSVPQI LEQEQENNVT SELDEAPPSI DISVSVSKDQ HAK
001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV
Arabidopsis Description
Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.