Factsheet for Solyc10g074800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g097100.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01970.1	Solyc03g097100.1.1	AT3G03000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071236	Potato	nucleus, plastid	95.4	94.24
Solyc09g055670.1.1	Tomato	cytosol	13.19	69.35
CDX98180	Canola	mitochondrion	33.74	60.77
Solyc09g055590.2.1	Tomato	nucleus	32.52	55.79
PGSC0003DMT400071259	Potato	extracellular, golgi	30.06	50.52
Bra005657.1-P	Field mustard	mitochondrion	23.01	47.77
Bra010801.1-P	Field mustard	nucleus	50.0	43.47
CDY63845	Canola	nucleus	46.32	43.14
CDX90224	Canola	nucleus	46.32	42.78
AT1G30050.1	Thale cress	nucleus	50.61	42.42
VIT_08s0056g00430.t01	Wine grape	nucleus	55.52	42.39
CDX99879	Canola	mitochondrion	50.31	41.41
Bra032355.1-P	Field mustard	nucleus	50.0	41.06
AT5G01970.1	Thale cress	mitochondrion, nucleus	44.17	41.03
CDY26298	Canola	nucleus	50.0	40.85
KRH09568	Soybean	nucleus	47.85	40.73
Zm00001d010455_P013	Maize	plastid	46.63	40.64
KRH64858	Soybean	nucleus	47.55	40.58
KRH40636	Soybean	nucleus	49.39	38.61
KRH00520	Soybean	nucleus	49.39	37.97
CDY11166	Canola	cytosol	18.1	37.34
Os05t0315200-01	Rice	plasma membrane	47.55	36.99
GSMUA_Achr3P09690_001	Banana	mitochondrion	44.79	34.52
TraesCS1D01G124900.2	Wheat	nucleus	44.17	33.26
GSMUA_Achr8P21430_001	Banana	mitochondrion	46.32	33.11
TraesCS1A01G128300.1	Wheat	cytosol, plastid	43.87	33.03
OQU77734	Sorghum	nucleus, plastid	28.83	32.08
TraesCS1B01G146700.2	Wheat	mitochondrion	44.17	31.37
CDY11165	Canola	cytosol	1.53	26.32
Solyc06g008980.2.1	Tomato	nucleus	21.17	20.78

Protein Annotations

EnsemblPlants:Solyc10g074800.1.1	EnsemblPlantsGene:Solyc10g074800.1	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6	SEG:seg
UniParc:UPI0002769A5B	UniProt:K4D1S2	MapMan:20.2.4.4	:	:	:

Description

No Description!

Coordinates

chr10:+:58512372..58514967

Molecular Weight (calculated)

36235.1 Da

IEP (calculated)

7.378

GRAVY (calculated)

-0.783

Length

326 amino acids

Sequence
(BLAST)

001: MAYRRKQGIS RSSTFQEESI FRSPAEPKQG ISRSSTFHHE TATSRSPGDP FSSSSSSSSS SLAAQAIRAS VAHNRRASQD ALSNGYSENE ANGFWGVLAR
101: KGKDILEESQ EGRTILETSQ DHVSNGRNPW QMQTTRPQTQ TVHEDQLKAS RDVAMATAAK AKLLLRELKT VKADLAFAKQ RSSQLEEENK MLREAREKGD
201: NPADDDMIRL QLETLLAEKA RLAHENSVYA RENLILREIV EYHQLTMQDV VYLDEGFEEV TEVSPIPAVS RMLSVSPPLS PKSIHHSSPS RNSSFTNLTT
301: LGSQQVNTNE EISTTTSSKG KDLTRK

Best Arabidopsis Sequence Match ( AT1G30050.1 )
(BLAST)

001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV

Arabidopsis Description

Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.