Factsheet for Solyc03g097100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g091710.2.1
Solyc03g110960.2.1
Solyc04g054900.2.1
Solyc06g071960.2.1
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03000.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT3G03000.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT3G03000.1	Solyc02g091710.2.1	AT2G22680.1	21798944
AT3G03000.1	Solyc04g054900.2.1	AT5G10110.1	21798944
AT3G03000.1	Solyc03g110960.2.1	AT5G63310.1	21798944
AT3G03000.1	Solyc06g071960.2.1	AT5G63310.1	21798944
AT3G03000.1	Solyc02g091710.2.1	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008152	Potato	cytosol	98.77	98.77
VIT_16s0039g01880.t01	Wine grape	cytosol	82.21	82.21
VIT_02s0012g02060.t01	Wine grape	cytosol	81.6	81.6
KRH25249	Soybean	cytosol	79.75	79.75
AT3G03000.1	Thale cress	cytosol	79.14	78.18
KRH30413	Soybean	cytosol	74.23	76.1
CDY58544	Canola	cytosol	77.91	75.15
Bra021379.1-P	Field mustard	cytosol	77.91	75.15
AT1G32250.1	Thale cress	cytosol	73.01	71.69
CDY54677	Canola	cytosol	71.17	69.88
CDY61824	Canola	cytosol	70.55	69.28
Bra040770.1-P	Field mustard	cytosol	70.55	69.28
TraesCS1B01G208700.1	Wheat	cytosol	71.78	61.26
TraesCS1A01G193700.1	Wheat	cytosol	71.78	60.62
TraesCS1D01G197600.1	Wheat	cytosol	71.78	60.31
Os01t0505600-01	Rice	cytosol	74.23	57.35
HORVU1Hr1G080000.3	Barley	cytosol	64.42	56.15
OQU84270	Sorghum	cytosol, plastid	73.62	54.79
Solyc01g010020.2.1	Tomato	cytosol	50.92	51.55
Solyc03g114420.1.1	Tomato	cytosol	53.37	50.88
Solyc10g081170.1.1	Tomato	extracellular	45.4	49.66
Solyc06g053930.2.1	Tomato	cytosol	44.79	48.99
Solyc12g099990.1.1	Tomato	nucleus	44.79	48.99
Solyc11g072240.1.1	Tomato	cytosol	44.79	48.99
Solyc10g077010.1.1	Tomato	cytosol	44.79	48.99
Solyc01g008950.2.1	Tomato	nucleus	44.17	48.32
Solyc03g098050.2.1	Tomato	nucleus	43.56	47.65
Solyc01g105630.2.1	Tomato	cytosol	37.42	41.5
HORVU1Hr1G050720.2	Barley	cytosol	65.64	41.0
Solyc03g005240.1.1	Tomato	cytosol	36.2	38.56
Solyc03g083520.2.1	Tomato	cytosol, nucleus	31.9	34.67
Solyc11g072270.1.1	Tomato	cytosol	30.67	32.05
Solyc02g090810.2.1	Tomato	cytosol, mitochondrion	30.67	29.76
Solyc04g026350.2.1	Tomato	cytosol	28.83	27.17

Protein Annotations

EnsemblPlants:Solyc03g097100.1.1	EnsemblPlantsGene:Solyc03g097100.1	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR44256	PANTHER:PTHR44256:SF1
PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054	SUPFAM:SSF47473
UniParc:UPI00027681A3	UniProt:K4BJC7	MapMan:35.1	:	:	:

Description

Probable calcium-binding protein CML18 [Source:Projected from Arabidopsis thaliana (AT3G03000) UniProtKB/Swiss-Prot;Acc:Q9M8U1]

Coordinates

chr3:+:59444910..59445401

Molecular Weight (calculated)

18009.0 Da

IEP (calculated)

4.102

GRAVY (calculated)

-0.397

Length

163 amino acids

Sequence
(BLAST)

001: MSGDAEPKLD DDQIAELREI FRSFDRNNDG SLTQLELGSL LRSLGLKPSN DQLEDLIQKA DRNSNGLIEF SEFVALVAPE LISAKCPYSE EQLKKIFQMF
101: DRDGNGVITA AELAHSMAKL GHALTQEELT GMIKEADRDG DGCISFEEFA QAMTSAAFDN SWT

Best Arabidopsis Sequence Match ( AT3G03000.1 )
(BLAST)

001: MSCDGGKPAP AKLGDEQLAE LREIFRSFDQ NKDGSLTELE LGSLLRSLGL KPSQDQLDTL IQKADRNNNG LVEFSEFVAL VEPDLVKCPY TDDQLKAIFR
101: MFDRDGNGYI TAAELAHSMA KLGHALTAEE LTGMIKEADR DGDGCIDFQE FVQAITSAAF DNAWG

Arabidopsis Description

CML18Probable calcium-binding protein CML18 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.