Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400053153 | Potato | nucleus | 95.54 | 95.28 |
| Bra024356.1-P | Field mustard | cytosol | 16.71 | 43.8 |
| Bra006048.1-P | Field mustard | cytosol | 16.43 | 40.97 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 9.47 | 32.38 |
| CDX81159 | Canola | nucleus | 23.12 | 29.12 |
| CDX78368 | Canola | nucleus | 22.84 | 29.08 |
| CDY08819 | Canola | nucleus | 23.96 | 26.79 |
| VIT_00s1188g00010.t01 | Wine grape | cytosol | 27.3 | 26.7 |
| CDY14541 | Canola | nucleus | 22.28 | 26.06 |
| KRH59375 | Soybean | nucleus | 20.61 | 25.87 |
| TraesCS6D01G281500.1 | Wheat | cytosol, nucleus, plastid | 22.56 | 25.23 |
| Os02t0752300-01 | Rice | nucleus | 23.12 | 25.23 |
| KRH43214 | Soybean | nucleus | 20.89 | 25.0 |
| AT5G65120.1 | Thale cress | nucleus | 22.01 | 24.92 |
| CDY18686 | Canola | cytosol | 20.33 | 24.75 |
| Bra037805.1-P | Field mustard | cytosol | 20.33 | 24.75 |
| CDX81268 | Canola | nucleus | 20.33 | 24.01 |
| TraesCS6B01G331200.2 | Wheat | cytosol, mitochondrion, nucleus | 21.45 | 23.99 |
| AT5G10110.1 | Thale cress | nucleus | 20.61 | 23.05 |
| OQU85411 | Sorghum | nucleus | 20.06 | 21.69 |
| TraesCS6A01G302100.1 | Wheat | cytosol | 20.61 | 21.51 |
| HORVU0Hr1G017100.2 | Barley | cytosol | 21.45 | 21.33 |
| Zm00001d052230_P001 | Maize | nucleus | 18.38 | 19.94 |
| VIT_00s0662g00020.t01 | Wine grape | cytosol, nucleus | 16.16 | 15.1 |
Protein Annotations
| EnsemblPlants:Solyc04g054900.2.1 | EnsemblPlantsGene:Solyc04g054900.2 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF2 | SEG:seg | UniParc:UPI0002765A47 |
| UniProt:K4BSN8 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:53384012..53387542
Molecular Weight (calculated)
38887.3 Da
IEP (calculated)
4.592
GRAVY (calculated)
-0.598
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEDNAVERC HKSRPVLRNI TNQLGNKRPF SSLLGNSSLK CVDKGNENLG GKFVLVDDGD NAKRVCVGPR PCSKIKSSKV DVVSGISNIP NDNQDPSLLR
101: VDSATAICQS TIGDKENNDA CGSAIEIVND REIIPKKNSA VINDMDGVVT GVPVPALSGT DDHDATRSCG INEDSEDTES EDMFPNGPDE QGLDNLVMSL
201: SGSVDLARLP DSQESRVKLE TCTGTQACED NSGLSASIES IKACSCTFCT KAAYIWLDLH YQDTKGRISA IKKSQREASL LVERSGKGKE LQKEGPEKNT
301: EAANLESSLM GHWKSLFQHM EHIFQREADQ LEGSLVTLTD LKDRCKTELD SSNGTSENC
101: VDSATAICQS TIGDKENNDA CGSAIEIVND REIIPKKNSA VINDMDGVVT GVPVPALSGT DDHDATRSCG INEDSEDTES EDMFPNGPDE QGLDNLVMSL
201: SGSVDLARLP DSQESRVKLE TCTGTQACED NSGLSASIES IKACSCTFCT KAAYIWLDLH YQDTKGRISA IKKSQREASL LVERSGKGKE LQKEGPEKNT
301: EAANLESSLM GHWKSLFQHM EHIFQREADQ LEGSLVTLTD LKDRCKTELD SSNGTSENC
001: MTGDWCSLVV SKETRVALCD MTNLPSKRGL SAILGDLLLK SGDDSGKSLA AREGSGVKFS KRLCLVVDDL VKESTRTSDT NEASSSEDKI SYDCDSENLD
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT
Arabidopsis Description
At5g65120 [Source:UniProtKB/TrEMBL;Acc:B4F7Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.