Factsheet for VIT_00s1188g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0662g00020.t01	Wine grape	cytosol, nucleus	74.39	71.09
Bra006048.1-P	Field mustard	cytosol	22.34	56.94
Bra024356.1-P	Field mustard	cytosol	19.89	53.28
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	13.62	47.62
CDX81159	Canola	nucleus	28.61	36.84
CDX78368	Canola	nucleus	28.07	36.52
KRH43214	Soybean	nucleus	28.88	35.33
KRH59375	Soybean	nucleus	27.52	35.31
CDY14541	Canola	nucleus	27.79	33.22
CDY08819	Canola	nucleus	28.88	33.02
AT5G10110.1	Thale cress	nucleus	27.52	31.46
Bra037805.1-P	Field mustard	cytosol	25.07	31.19
AT5G65120.1	Thale cress	nucleus	26.43	30.6
CDX81268	Canola	nucleus	25.34	30.59
CDY18686	Canola	cytosol	23.98	29.83
Os02t0752300-01	Rice	nucleus	25.34	28.27
Solyc04g054900.2.1	Tomato	nucleus	26.7	27.3
PGSC0003DMT400053153	Potato	nucleus	26.7	27.22
TraesCS6D01G281500.1	Wheat	cytosol, nucleus, plastid	23.16	26.48
TraesCS6B01G331200.2	Wheat	cytosol, mitochondrion, nucleus	22.89	26.17
OQU85411	Sorghum	nucleus	22.89	25.3
TraesCS6A01G302100.1	Wheat	cytosol	22.89	24.42
Zm00001d052230_P001	Maize	nucleus	21.8	24.17
HORVU0Hr1G017100.2	Barley	cytosol	22.62	22.99

Protein Annotations

ArrayExpress:VIT_00s1188g00010	EMBL:FN595584	EnsemblPlants:VIT_00s1188g00010.t01	EnsemblPlantsGene:VIT_00s1188g00010	EntrezGene:100853094	EntrezGene:LOC100853094
PANTHER:PTHR33924	PANTHER:PTHR33924:SF2	ProteinID:CCB50198	ProteinID:CCB50198.1	RefSeq:XP_003635516	RefSeq:XP_003635516.1
RefSeq:XP_010647445.1	RefSeq:XP_019074217.1	UniParc:UPI000210AA0F	UniProt:F6HDA3	wikigene:100853094	wikigene:LOC100853094
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:37731112..37733432

Molecular Weight (calculated)

39650.7 Da

IEP (calculated)

6.840

GRAVY (calculated)

-0.575

Length

367 amino acids

Sequence
(BLAST)

001: MMSSDSSADG LRKNRLVLAD LTNQTGKRGF QFISGNRGVK SGDGYGNIVD YKQGDLEFAK RVCQGVENLM KGKCNTNCGL NGDDEDLSLL KGKKVCGLRE
101: NVSSLISNIP KEIKEPSNLL DNSTGIALGG VVIPSDKEVG NASRDSCPST GSMPTGSEPS ESEGYNFGEK CQDDDQIIAS DVTQKGPSLG SCGNDGKGAP
201: VVDMPNRYGS VDFSRFAESQ GSKSFELGRC TGLKNDACSN LNVDANMLKA CSCPFCLKAA YIWSDLHYQD IKGRIAALKK SQKEASILVQ RSCRAKETDA
301: HGHVNPNKAS KLESELMGQW RSLFLSMGDI LAHENGQLQS SFLTLKDLRE NCKTNLELTN RMPSDKQ

Best Arabidopsis Sequence Match ( AT5G10110.1 )
(BLAST)

001: MTEDSSKSVS EQTRPVLSDL TNLPKKRGIS SILGDLLDES GKTVAHEVSK EKFSKRLCLV VDDLVKENAT PLDTIQGSCS FDKNTSGDAV DKEEYHDAVM
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q

Arabidopsis Description

DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q8VZV8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.