Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024356.1-P | Field mustard | cytosol | 42.68 | 100.0 |
| CDY14541 | Canola | nucleus | 86.29 | 90.23 |
| AT5G65120.1 | Thale cress | nucleus | 57.94 | 58.68 |
| CDY18686 | Canola | cytosol | 53.89 | 58.64 |
| CDX81268 | Canola | nucleus | 53.27 | 56.25 |
| CDX81159 | Canola | nucleus | 44.24 | 49.82 |
| CDX78368 | Canola | nucleus | 43.3 | 49.29 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 12.77 | 39.05 |
| KRH43214 | Soybean | nucleus | 28.04 | 30.0 |
| VIT_00s1188g00010.t01 | Wine grape | cytosol | 33.02 | 28.88 |
| KRH59375 | Soybean | nucleus | 25.55 | 28.67 |
| Os02t0752300-01 | Rice | nucleus | 28.97 | 28.27 |
| TraesCS6B01G331200.2 | Wheat | cytosol, mitochondrion, nucleus | 25.55 | 25.55 |
| TraesCS6D01G281500.1 | Wheat | cytosol, nucleus, plastid | 25.55 | 25.55 |
| Zm00001d052230_P001 | Maize | nucleus | 26.17 | 25.38 |
| OQU85411 | Sorghum | nucleus | 25.23 | 24.4 |
| Solyc04g054900.2.1 | Tomato | nucleus | 26.79 | 23.96 |
| TraesCS6A01G302100.1 | Wheat | cytosol | 24.92 | 23.26 |
| PGSC0003DMT400053153 | Potato | nucleus | 25.86 | 23.06 |
| HORVU0Hr1G017100.2 | Barley | cytosol | 24.92 | 22.16 |
| VIT_00s0662g00020.t01 | Wine grape | cytosol, nucleus | 19.63 | 16.41 |
Protein Annotations
| EnsemblPlants:CDY08819 | EnsemblPlantsGene:GSBRNA2T00000781001 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF2 | ProteinID:CDY08819 | ProteinID:CDY08819.1 |
| UniParc:UPI0004EF3B7E | UniProt:A0A078F6Z9 | MapMan:35.2 | : | : | : |
Description
BnaA06g24050DBnaA06g24050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6Z9]
Coordinates
chrLK031989:-:723385..725068
Molecular Weight (calculated)
34918.3 Da
IEP (calculated)
4.335
GRAVY (calculated)
-0.570
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGDSCSLVS KETRLPLCDM TNVPSKRGIS SILGDFLLKS GDDAGKTVAR EGSGVKFSKR LCLVVDDLVK ESTRTSDAND GSSDDDKISF GDSPAVDADS
101: ENFDVKESQG ETNAVDTAVE LSQRECDKDS NVADFSSQTD PVAGEDLTMT LFSSSNCESD DRLATVAAEG TGLLASSETI KPFNMSRCSA VDNNMDADDE
201: LKSCSCSFCL KAAYIWSDLH YQDIKGRLSV LKKSQKEASS LIRRNGKGRP TDVYGSENSN NSTNVEFDVM GQWTSLFLNM EGILARESSH LQDSFVTMKE
301: LRENCKIDLE RATKTPQQNN T
101: ENFDVKESQG ETNAVDTAVE LSQRECDKDS NVADFSSQTD PVAGEDLTMT LFSSSNCESD DRLATVAAEG TGLLASSETI KPFNMSRCSA VDNNMDADDE
201: LKSCSCSFCL KAAYIWSDLH YQDIKGRLSV LKKSQKEASS LIRRNGKGRP TDVYGSENSN NSTNVEFDVM GQWTSLFLNM EGILARESSH LQDSFVTMKE
301: LRENCKIDLE RATKTPQQNN T
001: MTGDWCSLVV SKETRVALCD MTNLPSKRGL SAILGDLLLK SGDDSGKSLA AREGSGVKFS KRLCLVVDDL VKESTRTSDT NEASSSEDKI SYDCDSENLD
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT
Arabidopsis Description
At5g65120 [Source:UniProtKB/TrEMBL;Acc:B4F7Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.