Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024356.1-P | Field mustard | cytosol | 44.3 | 99.27 |
| CDY08819 | Canola | nucleus | 90.23 | 86.29 |
| AT5G65120.1 | Thale cress | nucleus | 63.84 | 61.83 |
| CDY18686 | Canola | cytosol | 57.33 | 59.66 |
| CDX81268 | Canola | nucleus | 57.0 | 57.57 |
| CDX81159 | Canola | nucleus | 43.32 | 46.67 |
| CDX78368 | Canola | nucleus | 42.35 | 46.1 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 13.36 | 39.05 |
| KRH43214 | Soybean | nucleus | 28.66 | 29.33 |
| VIT_00s1188g00010.t01 | Wine grape | cytosol | 33.22 | 27.79 |
| KRH59375 | Soybean | nucleus | 25.41 | 27.27 |
| Os02t0752300-01 | Rice | nucleus | 28.99 | 27.05 |
| TraesCS6B01G331200.2 | Wheat | cytosol, mitochondrion, nucleus | 26.06 | 24.92 |
| Zm00001d052230_P001 | Maize | nucleus | 26.71 | 24.77 |
| TraesCS6D01G281500.1 | Wheat | cytosol, nucleus, plastid | 25.73 | 24.61 |
| OQU85411 | Sorghum | nucleus | 26.06 | 24.1 |
| TraesCS6A01G302100.1 | Wheat | cytosol | 25.08 | 22.38 |
| Solyc04g054900.2.1 | Tomato | nucleus | 26.06 | 22.28 |
| PGSC0003DMT400053153 | Potato | nucleus | 25.41 | 21.67 |
| HORVU0Hr1G017100.2 | Barley | cytosol | 25.08 | 21.33 |
| VIT_00s0662g00020.t01 | Wine grape | cytosol, nucleus | 19.22 | 15.36 |
Protein Annotations
| EnsemblPlants:CDY14541 | EnsemblPlantsGene:GSBRNA2T00079264001 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF2 | ProteinID:CDY14541 | ProteinID:CDY14541.1 |
| SEG:seg | UniParc:UPI0004EF1ACE | UniProt:A0A078FN97 | MapMan:35.2 | : | : |
Description
BnaC03g49180DBnaC03g49180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FN97]
Coordinates
chrLK032044:+:315535..317198
Molecular Weight (calculated)
33458.7 Da
IEP (calculated)
4.530
GRAVY (calculated)
-0.615
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGDSCSLVS KETRLPLCDM TNVPSKRGIS SIPGDFLLKS GDDAGKTVAR EGSGVKFSKR LCLVVDDLVK ESTRTSDTND GSSSDGKISF GDSPADSENF
101: DLKESQGETN AVDTAVELTQ RECDKDSNVA DFSSQTDPVA GEDLTMTVSS SSNCERTGLL ASSETIKPFN MSRCSAVDNN MDADDELKSC SCSFCLKAAY
201: IWSDLHYQDI KGRLSVLKKS QKEASSLIRR NGKGRATDVY GSENSNNSTN VEFDVMGQWT SLFLNMEGIL ARESSHLQDS FVTMKELREN CKIDLERATK
301: TPQQNNT
101: DLKESQGETN AVDTAVELTQ RECDKDSNVA DFSSQTDPVA GEDLTMTVSS SSNCERTGLL ASSETIKPFN MSRCSAVDNN MDADDELKSC SCSFCLKAAY
201: IWSDLHYQDI KGRLSVLKKS QKEASSLIRR NGKGRATDVY GSENSNNSTN VEFDVMGQWT SLFLNMEGIL ARESSHLQDS FVTMKELREN CKIDLERATK
301: TPQQNNT
001: MTGDWCSLVV SKETRVALCD MTNLPSKRGL SAILGDLLLK SGDDSGKSLA AREGSGVKFS KRLCLVVDDL VKESTRTSDT NEASSSEDKI SYDCDSENLD
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT
Arabidopsis Description
At5g65120 [Source:UniProtKB/TrEMBL;Acc:B4F7Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.