Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10110.1 | CDX93166 | AT2G40630.1 | 21798944 |
| AT5G10110.1 | CDY06973 | AT2G40630.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006048.1-P | Field mustard | cytosol | 51.06 | 100.0 |
| CDX81159 | Canola | nucleus | 91.84 | 90.88 |
| CDY08819 | Canola | nucleus | 49.29 | 43.3 |
| AT5G10110.1 | Thale cress | nucleus | 49.29 | 43.3 |
| CDY14541 | Canola | nucleus | 46.1 | 42.35 |
| CDY18686 | Canola | cytosol | 41.13 | 39.32 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 14.54 | 39.05 |
| CDX81268 | Canola | nucleus | 40.78 | 37.83 |
| KRH43214 | Soybean | nucleus | 30.85 | 29.0 |
| VIT_00s1188g00010.t01 | Wine grape | cytosol | 36.52 | 28.07 |
| Os02t0752300-01 | Rice | nucleus | 32.62 | 27.96 |
| KRH59375 | Soybean | nucleus | 28.01 | 27.62 |
| TraesCS6B01G331200.2 | Wheat | cytosol, mitochondrion, nucleus | 30.14 | 26.48 |
| TraesCS6D01G281500.1 | Wheat | cytosol, nucleus, plastid | 29.79 | 26.17 |
| TraesCS6A01G302100.1 | Wheat | cytosol | 29.43 | 24.13 |
| OQU85411 | Sorghum | nucleus | 27.66 | 23.49 |
| HORVU0Hr1G017100.2 | Barley | cytosol | 29.79 | 23.27 |
| Zm00001d052230_P001 | Maize | nucleus | 27.3 | 23.26 |
| Solyc04g054900.2.1 | Tomato | nucleus | 29.08 | 22.84 |
| PGSC0003DMT400053153 | Potato | nucleus | 28.01 | 21.94 |
| VIT_00s0662g00020.t01 | Wine grape | cytosol, nucleus | 18.09 | 13.28 |
Protein Annotations
| EnsemblPlants:CDX78368 | EnsemblPlantsGene:GSBRNA2T00129739001 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF2 | ProteinID:CDX78368 | ProteinID:CDX78368.1 |
| SEG:seg | UniParc:UPI0004EE0C72 | MapMan:35.2 | : | : | : |
Description
BnaA03g02800D
Coordinates
chrLK031815:-:464041..465554
Molecular Weight (calculated)
30795.2 Da
IEP (calculated)
5.469
GRAVY (calculated)
-0.579
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEDSGELAA PGEIRPALAN LTNLPKKRSI SSDSLDSPRV EFSKRLCVVV DDLVKQNGSS SSGSKCSSDD DKGSGGDAMV EVSSGDAKPL KGIYFEPGDR
101: DGAREFKTDE GLALSLLSSS DAEIKKELGS CQNLRSFEMS RCSNVGKEER VNVNMGDDDD LIKSCSCSFC LKAAYIWSDL HYQDIKGRLS ALKKSQKVAS
201: GLIQRNDKEK QPTGFHSLVN SVGAAKLESD LMAQWRSLFL GMGDILAHES NHLQNSFMTM KDLREDCKID LERATKTPQH NT
101: DGAREFKTDE GLALSLLSSS DAEIKKELGS CQNLRSFEMS RCSNVGKEER VNVNMGDDDD LIKSCSCSFC LKAAYIWSDL HYQDIKGRLS ALKKSQKVAS
201: GLIQRNDKEK QPTGFHSLVN SVGAAKLESD LMAQWRSLFL GMGDILAHES NHLQNSFMTM KDLREDCKID LERATKTPQH NT
001: MTEDSSKSVS EQTRPVLSDL TNLPKKRGIS SILGDLLDES GKTVAHEVSK EKFSKRLCLV VDDLVKENAT PLDTIQGSCS FDKNTSGDAV DKEEYHDAVM
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q
Arabidopsis Description
DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q8VZV8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.