Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006048.1-P | Field mustard | cytosol | 30.84 | 68.75 |
| CDX81159 | Canola | nucleus | 44.86 | 50.53 |
| CDX78368 | Canola | nucleus | 43.3 | 49.29 |
| AT5G65120.1 | Thale cress | nucleus | 41.43 | 41.96 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 11.53 | 35.24 |
| KRH43214 | Soybean | nucleus | 27.1 | 29.0 |
| VIT_00s1188g00010.t01 | Wine grape | cytosol | 31.46 | 27.52 |
| KRH59375 | Soybean | nucleus | 24.3 | 27.27 |
| Os02t0752300-01 | Rice | nucleus | 26.48 | 25.84 |
| TraesCS6B01G331200.2 | Wheat | cytosol, mitochondrion, nucleus | 24.61 | 24.61 |
| TraesCS6D01G281500.1 | Wheat | cytosol, nucleus, plastid | 23.99 | 23.99 |
| Zm00001d052230_P001 | Maize | nucleus | 23.68 | 22.96 |
| OQU85411 | Sorghum | nucleus | 22.74 | 21.99 |
| TraesCS6A01G302100.1 | Wheat | cytosol | 22.74 | 21.22 |
| Solyc04g054900.2.1 | Tomato | nucleus | 23.05 | 20.61 |
| HORVU0Hr1G017100.2 | Barley | cytosol | 23.05 | 20.5 |
| PGSC0003DMT400053153 | Potato | nucleus | 22.43 | 20.0 |
| VIT_00s0662g00020.t01 | Wine grape | cytosol, nucleus | 18.07 | 15.1 |
Protein Annotations
| MapMan:35.2 | EntrezGene:830875 | ProteinID:AED91495.1 | ArrayExpress:AT5G10110 | EnsemblPlantsGene:AT5G10110 | RefSeq:AT5G10110 |
| TAIR:AT5G10110 | RefSeq:AT5G10110-TAIR-G | EnsemblPlants:AT5G10110.1 | TAIR:AT5G10110.1 | EMBL:AY063803 | EMBL:AY096706 |
| Unigene:At.27192 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0032774 | RefSeq:NP_196573.2 |
| PO:PO:0000293 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF2 | UniProt:Q8VZV8 | UniParc:UPI000009DD94 | : |
Description
DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q8VZV8]
Coordinates
chr5:-:3166343..3168346
Molecular Weight (calculated)
35567.7 Da
IEP (calculated)
6.004
GRAVY (calculated)
-0.677
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEDSSKSVS EQTRPVLSDL TNLPKKRGIS SILGDLLDES GKTVAHEVSK EKFSKRLCLV VDDLVKENAT PLDTIQGSCS FDKNTSGDAV DKEEYHDAVM
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.