Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 3
- nucleus 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P09810_001 | |
| GSMUA_Achr8P21390_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10110.1 | GSMUA_Achr3P09810_001 | AT2G40630.1 | 21798944 |
| AT5G10110.1 | GSMUA_Achr8P21390_001 | AT2G40630.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024356.1-P | Field mustard | cytosol | 39.05 | 29.93 |
| Bra006048.1-P | Field mustard | cytosol | 39.05 | 28.47 |
| OQU85411 | Sorghum | nucleus | 57.14 | 18.07 |
| Os02t0752300-01 | Rice | nucleus | 56.19 | 17.93 |
| Zm00001d052230_P001 | Maize | nucleus | 55.24 | 17.52 |
| TraesCS6D01G281500.1 | Wheat | cytosol, nucleus, plastid | 51.43 | 16.82 |
| TraesCS6B01G331200.2 | Wheat | cytosol, mitochondrion, nucleus | 49.52 | 16.2 |
| CDX78368 | Canola | nucleus | 39.05 | 14.54 |
| TraesCS6A01G302100.1 | Wheat | cytosol | 47.62 | 14.53 |
| CDX81159 | Canola | nucleus | 39.05 | 14.39 |
| KRH43214 | Soybean | nucleus | 40.95 | 14.33 |
| KRH59375 | Soybean | nucleus | 37.14 | 13.64 |
| VIT_00s1188g00010.t01 | Wine grape | cytosol | 47.62 | 13.62 |
| CDY14541 | Canola | nucleus | 39.05 | 13.36 |
| HORVU0Hr1G017100.2 | Barley | cytosol | 44.76 | 13.02 |
| CDY08819 | Canola | nucleus | 39.05 | 12.77 |
| CDY18686 | Canola | cytosol | 35.24 | 12.54 |
| Bra037805.1-P | Field mustard | cytosol | 35.24 | 12.54 |
| CDX81268 | Canola | nucleus | 35.24 | 12.17 |
| AT5G65120.1 | Thale cress | nucleus | 35.24 | 11.67 |
| AT5G10110.1 | Thale cress | nucleus | 35.24 | 11.53 |
| Solyc04g054900.2.1 | Tomato | nucleus | 32.38 | 9.47 |
| PGSC0003DMT400053153 | Potato | nucleus | 32.38 | 9.44 |
| VIT_00s0662g00020.t01 | Wine grape | cytosol, nucleus | 10.48 | 2.86 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P24500_001 | EnsemblPlants:GSMUA_Achr10T24500_001 | EnsemblPlantsGene:GSMUA_Achr10G24500_001 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF2 | UniParc:UPI0002954ACE |
| UniProt:M0RL25 | MapMan:35.2 | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G24500_001]
Coordinates
chr10:-:28932197..28935026
Molecular Weight (calculated)
12328.9 Da
IEP (calculated)
10.402
GRAVY (calculated)
-0.627
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MWADLHYQDA RGRLAALKKS KRLARTLEVR SCSSNHNIKA IQQSTKRSSE LEFELTQQWR SLFLRTENAL VLETAQLHTN FLRLKELREI CKRDLETISM
101: VPSDK
101: VPSDK
001: MTEDSSKSVS EQTRPVLSDL TNLPKKRGIS SILGDLLDES GKTVAHEVSK EKFSKRLCLV VDDLVKENAT PLDTIQGSCS FDKNTSGDAV DKEEYHDAVM
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q
Arabidopsis Description
DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q8VZV8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.