CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU84307

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10110.1	OQU84307	AT2G40630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052230_P001	Maize	nucleus	85.24	85.5
Os02t0752300-01	Rice	nucleus	60.84	61.4
TraesCS6B01G331200.2	Wheat	cytosol, mitochondrion, nucleus	56.33	58.26
TraesCS6D01G281500.1	Wheat	cytosol, nucleus, plastid	55.42	57.32
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	18.07	57.14
TraesCS6A01G302100.1	Wheat	cytosol	55.12	53.2
HORVU0Hr1G017100.2	Barley	cytosol	54.82	50.42
Bra024356.1-P	Field mustard	cytosol	17.17	41.61
Bra006048.1-P	Field mustard	cytosol	15.96	36.81
Bra037805.1-P	Field mustard	cytosol	25.0	28.14
CDX78368	Canola	nucleus	23.49	27.66
CDX81159	Canola	nucleus	23.49	27.37
CDY18686	Canola	cytosol	24.1	27.12
CDX81268	Canola	nucleus	24.7	26.97
KRH59375	Soybean	nucleus	22.59	26.22
CDY14541	Canola	nucleus	24.1	26.06
KRH43214	Soybean	nucleus	23.49	26.0
CDY08819	Canola	nucleus	24.4	25.23
AT5G65120.1	Thale cress	nucleus	23.8	24.92
VIT_00s1188g00010.t01	Wine grape	cytosol	25.3	22.89
AT5G10110.1	Thale cress	nucleus	21.99	22.74
Solyc04g054900.2.1	Tomato	nucleus	21.69	20.06
PGSC0003DMT400053153	Potato	nucleus	21.69	20.0
VIT_00s0662g00020.t01	Wine grape	cytosol, nucleus	14.16	12.24

Protein Annotations

EnsemblPlants:OQU85411	EnsemblPlantsGene:SORBI_3004G233600	EntrezGene:8066413	PANTHER:PTHR33924	PANTHER:PTHR33924:SF2	ProteinID:EES05515.1
ProteinID:OQU85411	ProteinID:OQU85411.1	RefSeq:XP_002452539.1	UniParc:UPI0001A854A3	UniProt:C5XYP4	MapMan:35.2

Description

hypothetical protein

Coordinates

chr4:+:58219583..58224311

Molecular Weight (calculated)

36617.7 Da

IEP (calculated)

5.664

GRAVY (calculated)

-0.665

Length

332 amino acids

Sequence
(BLAST)

001: MAENTHGSGR CALGDLTNVL CKRPATSDLE KSTGGIKIRR IEKDTGTGKG FDENAKTSSR GKGIVFGHLF DGVAKENFER PSIFQNTRVQ HMAAEAAGLL
101: SKEASDLKNH YASIDSFDLS DKEQDSSLES EGDYDDEDND EMNGELPHHF CTSELANKTS TNDDECLTQE EIVGSSGNQK PLSSLDAMAG GDMPSSSIQH
201: ASMRTGGLEE AVATKSCACS FCLKAAFMWM DLHYQDARSR LSVLKKNIKF ARLLEERSRG SEYAANVAGY NSKRAVGMEF ELSQQQRSLF LYTENALVRE
301: STQLHSTFVK LKELRENCKT NLETISKSSM RK

Best Arabidopsis Sequence Match ( AT5G65120.1 )
(BLAST)

001: MTGDWCSLVV SKETRVALCD MTNLPSKRGL SAILGDLLLK SGDDSGKSLA AREGSGVKFS KRLCLVVDDL VKESTRTSDT NEASSSEDKI SYDCDSENLD
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT

Arabidopsis Description

At5g65120 [Source:UniProtKB/TrEMBL;Acc:B4F7Q0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.