CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43214	Soybean	nucleus	81.82	78.0
Bra006048.1-P	Field mustard	cytosol	20.28	40.28
Bra024356.1-P	Field mustard	cytosol	19.23	40.15
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	13.64	37.14
CDX78368	Canola	nucleus	27.62	28.01
VIT_00s1188g00010.t01	Wine grape	cytosol	35.31	27.52
CDX81159	Canola	nucleus	27.27	27.37
CDY08819	Canola	nucleus	28.67	25.55
Bra037805.1-P	Field mustard	cytosol	26.22	25.42
CDY18686	Canola	cytosol	26.22	25.42
CDY14541	Canola	nucleus	27.27	25.41
CDX81268	Canola	nucleus	26.22	24.67
AT5G10110.1	Thale cress	nucleus	27.27	24.3
AT5G65120.1	Thale cress	nucleus	25.87	23.34
Os02t0752300-01	Rice	nucleus	26.57	23.1
OQU85411	Sorghum	nucleus	26.22	22.59
TraesCS6B01G331200.2	Wheat	cytosol, mitochondrion, nucleus	25.17	22.43
Zm00001d052230_P001	Maize	nucleus	25.87	22.36
TraesCS6D01G281500.1	Wheat	cytosol, nucleus, plastid	24.83	22.12
TraesCS6A01G302100.1	Wheat	cytosol	25.52	21.22
Solyc04g054900.2.1	Tomato	nucleus	25.87	20.61
HORVU0Hr1G017100.2	Barley	cytosol	25.17	19.94
PGSC0003DMT400053153	Potato	nucleus	24.83	19.72
VIT_00s0662g00020.t01	Wine grape	cytosol, nucleus	24.13	17.97

Protein Annotations

EMBL:ACUP02003317	EnsemblPlants:KRH59375	EnsemblPlantsGene:GLYMA_05G180000	EntrezGene:100798703	PANTHER:PTHR33924	PANTHER:PTHR33924:SF2
ProteinID:KRH59373.1	ProteinID:KRH59374.1	ProteinID:KRH59375	ProteinID:KRH59375.1	ProteinID:KRH59376.1	ProteinID:KRH59377.1
UniParc:UPI00023C444D	UniProt:I1K4K7	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:36813067..36819982

Molecular Weight (calculated)

31998.9 Da

IEP (calculated)

6.424

GRAVY (calculated)

-0.537

Length

286 amino acids

Sequence
(BLAST)

001: MGSNDSFGDR IFKTRSHLAD VTNRPAKRPF SLVSGDGGDL QFTKLIRLGV ENLAKEKNQM QFGAQAHLNN VVLLQPKEKH PILLPFSDSH SFQDPIFPKE
101: GMEEHNTLDL ENFKFGEKGE GIVATDSAVE SGGKVICDVE NLGSPKRGTE QMPTISASND SNFLGLKPCS SSVTEAADVK SCTCSFCSKA AYIWSDLHYQ
201: DAKGRLSAIK KSQKEAKMII QKFSGLEDTI MHDQHRSEES LKLEFSLVHQ WKSLFLEIQN MYTQESSQLE SSFETLKILR EMQNRS

Best Arabidopsis Sequence Match ( AT5G10110.1 )
(BLAST)

001: MTEDSSKSVS EQTRPVLSDL TNLPKKRGIS SILGDLLDES GKTVAHEVSK EKFSKRLCLV VDDLVKENAT PLDTIQGSCS FDKNTSGDAV DKEEYHDAVM
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q

Arabidopsis Description

DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q8VZV8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.