Factsheet for TraesCS6B01G331200.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G095400.1
TraesCS6B01G123400.1
TraesCS6D01G088000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10110.1	TraesCS6A01G095400.1	AT2G40630.1	21798944
AT5G10110.1	TraesCS6B01G123400.1	AT2G40630.1	21798944
AT5G10110.1	TraesCS6D01G088000.1	AT2G40630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G281500.1	Wheat	cytosol, nucleus, plastid	95.64	95.64
TraesCS6A01G302100.1	Wheat	cytosol	91.59	85.47
HORVU0Hr1G017100.2	Barley	cytosol	87.85	78.12
Os02t0752300-01	Rice	nucleus	63.86	62.31
OQU85411	Sorghum	nucleus	58.26	56.33
Zm00001d052230_P001	Maize	nucleus	57.32	55.59
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	16.2	49.52
Bra024356.1-P	Field mustard	cytosol	15.58	36.5
Bra006048.1-P	Field mustard	cytosol	16.2	36.11
CDX78368	Canola	nucleus	26.48	30.14
CDX81159	Canola	nucleus	26.17	29.47
Bra037805.1-P	Field mustard	cytosol	24.61	26.78
CDY18686	Canola	cytosol	24.3	26.44
CDY14541	Canola	nucleus	24.92	26.06
CDY08819	Canola	nucleus	25.55	25.55
KRH59375	Soybean	nucleus	22.43	25.17
CDX81268	Canola	nucleus	23.36	24.67
AT5G10110.1	Thale cress	nucleus	24.61	24.61
AT5G65120.1	Thale cress	nucleus	24.3	24.61
KRH43214	Soybean	nucleus	22.43	24.0
VIT_00s1188g00010.t01	Wine grape	cytosol	26.17	22.89
PGSC0003DMT400053153	Potato	nucleus	24.3	21.67
Solyc04g054900.2.1	Tomato	nucleus	23.99	21.45
VIT_00s0662g00020.t01	Wine grape	cytosol, nucleus	16.82	14.06

Protein Annotations

EnsemblPlants:TraesCS6B01G331200.2

EnsemblPlantsGene:TraesCS6B01G331200

PANTHER:PTHR33924

PANTHER:PTHR33924:SF2

SEG:seg

MapMan:35.2

Description

No Description!

Coordinates

chr6B:+:582336964..582340737

Molecular Weight (calculated)

35048.9 Da

IEP (calculated)

5.792

GRAVY (calculated)

-0.667

Length

321 amino acids

Sequence
(BLAST)

001: MTENTQGSVR RAFGDLTNVL GKRPASCDLE KNAGGVKISR VEKVADPRKE SDEKAKANAG ASGNLFEVLV DGIGKEDFAR TSIFRGAKVQ HMAAQAAGLL
101: SKDDDDARNR CVSLDSSGLN DKAESSLESE GGCEGEDDED TDSELLPYAS EASKIVINDK TNEGECLTQE EMVVSPGNQN SQSSFDATAR DDMTCTNVQH
201: PPMEVGGLEK SCATKSCTCS FCLKAAFMWT NLHYQDARSR LGALKKSIKF ARSLEAKRQG NEFNADRYSK RAAEMGFKLS QQQRSLFLHT ENALVRESAQ
301: LHSAVVKLKD LRDNCKKDLK I

Best Arabidopsis Sequence Match ( AT5G10110.1 )
(BLAST)

001: MTEDSSKSVS EQTRPVLSDL TNLPKKRGIS SILGDLLDES GKTVAHEVSK EKFSKRLCLV VDDLVKENAT PLDTIQGSCS FDKNTSGDAV DKEEYHDAVM
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q

Arabidopsis Description

DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q8VZV8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.