Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G095400.1 | Wheat | nucleus | 94.83 | 94.66 |
| TraesCS6D01G088000.1 | Wheat | nucleus | 93.58 | 93.58 |
| HORVU6Hr1G017100.1 | Barley | cytosol | 92.16 | 91.99 |
| Zm00001d043415_P001 | Maize | cytosol | 5.88 | 82.5 |
| Zm00001d016658_P001 | Maize | nucleus | 27.81 | 71.89 |
| Zm00001d050601_P001 | Maize | nucleus | 27.81 | 71.89 |
| Zm00001d015148_P002 | Maize | nucleus | 68.98 | 69.11 |
| Zm00001d053987_P003 | Maize | nucleus | 68.63 | 69.0 |
| OQU84307 | Sorghum | nucleus | 68.98 | 68.74 |
| Os02t0132200-00 | Rice | plastid | 67.91 | 59.35 |
| GSMUA_Achr8P21390_001 | Banana | nucleus | 38.15 | 44.96 |
| GSMUA_Achr3P09810_001 | Banana | nucleus | 39.75 | 41.6 |
| CDX98827 | Canola | nucleus | 23.71 | 37.15 |
| Solyc06g048970.2.1 | Tomato | nucleus | 35.83 | 35.77 |
| PGSC0003DMT400042913 | Potato | nucleus | 35.83 | 35.77 |
| CDY14124 | Canola | nucleus | 24.96 | 34.31 |
| CDY06973 | Canola | nucleus | 19.79 | 34.15 |
| Bra016979.1-P | Field mustard | nucleus | 18.18 | 33.89 |
| VIT_13s0067g03020.t01 | Wine grape | nucleus | 34.94 | 32.5 |
| CDX93166 | Canola | golgi, vacuole | 19.96 | 32.37 |
| Bra028765.1-P | Field mustard | nucleus | 24.78 | 31.38 |
| Bra000196.1-P | Field mustard | nucleus | 23.89 | 30.32 |
| AT2G40630.1 | Thale cress | nucleus | 28.34 | 29.72 |
| Bra009098.1-P | Field mustard | nucleus | 26.56 | 29.62 |
| CDX70166 | Canola | nucleus | 25.31 | 29.34 |
| AT5G05240.1 | Thale cress | nucleus | 27.63 | 29.25 |
| KRH04846 | Soybean | nucleus | 29.41 | 29.05 |
| KRH15893 | Soybean | nucleus | 29.23 | 28.47 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G123400.1 | EnsemblPlantsGene:TraesCS6B01G123400 | InterPro:UCP030365 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF1 | PIRSF:PIRSF030365 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:118195070..118198037
Molecular Weight (calculated)
60674.7 Da
IEP (calculated)
7.754
GRAVY (calculated)
-0.599
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHAGPRSAP TDPAGSGAPP PPTAEELSRR ASGSGGGGAA EACGAAPAAQ LGDPRVGILE SSDQAQGRVH PCNKKDIPQF SAEGATKCEY RAPSLPRTGA
101: LLQLEPACLT LGRASDAVLA ESLHDANPLA RGKENIRAEL QLKADAKHSE NRMSDAPLGL DLNRVGSSDV AEVNPFFPYK KLGQSKVSDP SECGSTTGAT
201: GESESHRKWR EMKQNGFLSS THGTAVAPKP RGRPPKRKRD DELKRSTSTQ NEQTKFTKVA APSGLLSGLN PGIINHVRNS KQVYSIIKAM VRSEELENAS
301: QPGLAGQIGE RGKEAIERIQ DQKYGDSLMK CHLMMEGNNA MFHHQLPSAS KFLAGGGDNL KLQLSSTITM ASDRTCSTLD HESQHDYMTV LSVKAASVAS
401: QWLELLQQDI RGRLAALKRS RKRVRNALQT ELPHLISTEF SSSQENEPSI AHSSEAGPTG KTVSEEHAAR WRSLFLQMER TLQEEGRHLE IRLKEVQGML
501: QNCDKGLQQV TCEAPLLGPM AELWKLKNPE ISESEWAVQA AAASIYSTCN LVMKTENVPC F
101: LLQLEPACLT LGRASDAVLA ESLHDANPLA RGKENIRAEL QLKADAKHSE NRMSDAPLGL DLNRVGSSDV AEVNPFFPYK KLGQSKVSDP SECGSTTGAT
201: GESESHRKWR EMKQNGFLSS THGTAVAPKP RGRPPKRKRD DELKRSTSTQ NEQTKFTKVA APSGLLSGLN PGIINHVRNS KQVYSIIKAM VRSEELENAS
301: QPGLAGQIGE RGKEAIERIQ DQKYGDSLMK CHLMMEGNNA MFHHQLPSAS KFLAGGGDNL KLQLSSTITM ASDRTCSTLD HESQHDYMTV LSVKAASVAS
401: QWLELLQQDI RGRLAALKRS RKRVRNALQT ELPHLISTEF SSSQENEPSI AHSSEAGPTG KTVSEEHAAR WRSLFLQMER TLQEEGRHLE IRLKEVQGML
501: QNCDKGLQQV TCEAPLLGPM AELWKLKNPE ISESEWAVQA AAASIYSTCN LVMKTENVPC F
001: MSQVGKVSES FVTEGKNIKT ELLVGQEVKS SSSKLVLNTD VDCDKRALLK RCDNADAVSS CLNDDLTSVC SSRISQKTSS MDVYSECGSS NGSVAKRDPM
101: KVWTEMKQNG YLSNPNGGIS TTSSSCLISS SHGGIPAPKK RGRKTKINND AAVAKKRKIE RKEEVDRFAR LAAPSGLLNE LNPGIINHVR NKKQVLSIIE
201: NIVKSERDAG NYHSTLRHSN SADGSPRKNL GDACRSEFYQ VFQYALPKDM YSMRYYAEKC ADDEFSEENN TVRSRFQVAG KFSENDSSLS SEDASDLNSA
301: SVLTVNAATV ASQWLELLHQ DIKGRVSALR RSRKRVRAVV TIELPHLIRK EFPADQENDP TLLLGGASKA STVDIHKSRW MTLFKQLEHK LSEEESQLES
401: WLNQVRYMQS HCDEGLQHLS LSSGQNFLQL GMPLDSRAAN ALISDKDLVI KAAAASIYST CSFLEENITC S
101: KVWTEMKQNG YLSNPNGGIS TTSSSCLISS SHGGIPAPKK RGRKTKINND AAVAKKRKIE RKEEVDRFAR LAAPSGLLNE LNPGIINHVR NKKQVLSIIE
201: NIVKSERDAG NYHSTLRHSN SADGSPRKNL GDACRSEFYQ VFQYALPKDM YSMRYYAEKC ADDEFSEENN TVRSRFQVAG KFSENDSSLS SEDASDLNSA
301: SVLTVNAATV ASQWLELLHQ DIKGRVSALR RSRKRVRAVV TIELPHLIRK EFPADQENDP TLLLGGASKA STVDIHKSRW MTLFKQLEHK LSEEESQLES
401: WLNQVRYMQS HCDEGLQHLS LSSGQNFLQL GMPLDSRAAN ALISDKDLVI KAAAASIYST CSFLEENITC S
Arabidopsis Description
Uncharacterised conserved protein (UCP030365) [Source:TAIR;Acc:AT5G05240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.