Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000196.1-P | Field mustard | nucleus | 47.66 | 57.69 |
| Bra016979.1-P | Field mustard | nucleus | 27.48 | 48.84 |
| CDY06973 | Canola | nucleus | 27.66 | 45.54 |
| CDX93166 | Canola | golgi, vacuole | 28.6 | 44.22 |
| Zm00001d050601_P001 | Maize | nucleus | 15.51 | 38.25 |
| Zm00001d016658_P001 | Maize | nucleus | 14.95 | 36.87 |
| GSMUA_Achr8P21390_001 | Banana | nucleus | 28.04 | 31.51 |
| Zm00001d053987_P003 | Maize | nucleus | 30.28 | 29.03 |
| OQU84307 | Sorghum | nucleus | 30.28 | 28.77 |
| TraesCS6D01G088000.1 | Wheat | nucleus | 30.09 | 28.7 |
| TraesCS6A01G095400.1 | Wheat | nucleus | 30.09 | 28.65 |
| Zm00001d015148_P002 | Maize | nucleus | 29.91 | 28.57 |
| HORVU6Hr1G017100.1 | Barley | cytosol | 29.91 | 28.47 |
| TraesCS6B01G123400.1 | Wheat | nucleus | 29.72 | 28.34 |
| AT5G05240.1 | Thale cress | nucleus | 28.04 | 28.3 |
| GSMUA_Achr3P09810_001 | Banana | nucleus | 27.66 | 27.61 |
| Zm00001d043415_P001 | Maize | cytosol | 2.06 | 27.5 |
| Os02t0132200-00 | Rice | plastid | 29.53 | 24.61 |
Protein Annotations
| MapMan:35.2 | EntrezGene:818658 | ProteinID:AAM14814.1 | ProteinID:AEC09856.1 | EMBL:AF410292 | ProteinID:ANM62961.1 |
| ArrayExpress:AT2G40630 | EnsemblPlantsGene:AT2G40630 | RefSeq:AT2G40630 | TAIR:AT2G40630 | RefSeq:AT2G40630-TAIR-G | EnsemblPlants:AT2G40630.1 |
| TAIR:AT2G40630.1 | EMBL:AY113004 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | RefSeq:NP_001325082.1 | RefSeq:NP_030608.1 |
| PIRSF:PIRSF030365 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF1 | UniProt:Q94EI6 | InterPro:UCP030365 |
| UniParc:UPI000009DB2C | SEG:seg | : | : | : | : |
Description
At2g40630/T2P4.2 [Source:UniProtKB/TrEMBL;Acc:Q94EI6]
Coordinates
chr2:+:16958146..16961591
Molecular Weight (calculated)
58122.0 Da
IEP (calculated)
8.931
GRAVY (calculated)
-0.668
Length
535 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEQRGISSG VVSEPASNSV ISGEKRNGNG LDEKDELGSK RVKVPDLASD AKTSSLQSHG NSNSVQQPNL SSEKLSKVSK VLVAPDAEGI RRVVRENDVL
101: SKDIKPSSTV ETRTYLPKAK SISTDDNRRV VNSGKQALLE NHTVKTDDSK CRVVKNISLL KPRETTESVV SQRGAAEPSV SVPVGDKVSP FQMCSSADGS
201: LGESDSMRRW REMKRNGFLS GPLGGVAAPT STVVTTPVEV PAPKQQKNKR RGGESLKKKN DVPKKEQQLV DRFANVTAPS GLLTELNPGI INHVRTKKQV
301: CSIIEALIRS SNDDATTRER HGDFNVRDAI REDRALAFKL PSTGVSDNAI SITNPEQATS LAVEAATVAS QWLEFLQQDL SGRLSAVQDS RNRVQNILTT
401: ELPLLASSRE SSSNQANSLE MVTTNTSGDA SSDKAATETH QKRWTAKFDQ INKALYDEQR DLERSLNQVK EMQSRCNHGL RQMEEYSPFS SQSSDSSFGK
501: DGNQETSMAV QAAAASIFST CSFLLSMMKP PPTGS
101: SKDIKPSSTV ETRTYLPKAK SISTDDNRRV VNSGKQALLE NHTVKTDDSK CRVVKNISLL KPRETTESVV SQRGAAEPSV SVPVGDKVSP FQMCSSADGS
201: LGESDSMRRW REMKRNGFLS GPLGGVAAPT STVVTTPVEV PAPKQQKNKR RGGESLKKKN DVPKKEQQLV DRFANVTAPS GLLTELNPGI INHVRTKKQV
301: CSIIEALIRS SNDDATTRER HGDFNVRDAI REDRALAFKL PSTGVSDNAI SITNPEQATS LAVEAATVAS QWLEFLQQDL SGRLSAVQDS RNRVQNILTT
401: ELPLLASSRE SSSNQANSLE MVTTNTSGDA SSDKAATETH QKRWTAKFDQ INKALYDEQR DLERSLNQVK EMQSRCNHGL RQMEEYSPFS SQSSDSSFGK
501: DGNQETSMAV QAAAASIFST CSFLLSMMKP PPTGS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.