Factsheet for Bra000196.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G40630.1	Thale cress	nucleus	57.69	47.66
Bra016979.1-P	Field mustard	nucleus	29.86	43.85
Zm00001d043415_P001	Maize	cytosol	2.71	30.0
Zm00001d050601_P001	Maize	nucleus	14.25	29.03
Zm00001d016658_P001	Maize	nucleus	13.35	27.19
GSMUA_Achr8P21390_001	Banana	nucleus	28.28	26.26
Bra028765.1-P	Field mustard	nucleus	26.02	25.96
Bra009098.1-P	Field mustard	nucleus	28.96	25.45
TraesCS6D01G088000.1	Wheat	nucleus	31.22	24.6
OQU84307	Sorghum	nucleus	31.22	24.51
TraesCS6A01G095400.1	Wheat	nucleus	31.0	24.38
Zm00001d015148_P002	Maize	nucleus	30.77	24.29
Zm00001d053987_P003	Maize	nucleus	30.54	24.19
HORVU6Hr1G017100.1	Barley	cytosol	30.54	24.02
TraesCS6B01G123400.1	Wheat	nucleus	30.32	23.89
GSMUA_Achr3P09810_001	Banana	nucleus	28.73	23.69
Os02t0132200-00	Rice	plastid	30.77	21.18

Protein Annotations

EnsemblPlants:Bra000196.1	EnsemblPlants:Bra000196.1-P	EnsemblPlantsGene:Bra000196	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	ncoils:Coil	PANTHER:PTHR33924	PANTHER:PTHR33924:SF1
SEG:seg	UniParc:UPI00025402DA	UniProt:M4C7L8	MapMan:35.2	:	:

Description

AT2G40630 (E=5e-073) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP030365 (InterPro:IPR016953); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05240.1); Has 101 Blast hits to 95 proteins in 44 species: Archae - 0; Bacteria - 32; Metazoa - 24; Fungi - 6; Plants - 20; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).

Coordinates

chrA03:+:9821595..9823698

Molecular Weight (calculated)

47624.6 Da

IEP (calculated)

6.690

GRAVY (calculated)

-0.648

Length

442 amino acids

Sequence
(BLAST)

001: MDEKRGVLSE PASISPLSGQ KRVGDGLEER DELGSKRAKV RDLDSDTKIS SGQMSEVVVA PAAEGLGRVV VREKDVSAKD DNRLVANSGK QALDDSKSES
101: QRGGQVDAVS KNSSLLKPRE VSESVVVVSP RDPSVSNQMC GAEGSLEKSD SMRRWMEMKR NGFLSGPLGG VSAPSSAAPT TPVEVPAQKQ QKNKRRGDSV
201: KKRNEAPRKE QQQVDRFSNV TAPSGLLTEL NPGIINHVRS KKQVCSIIEA LIRNATVGER NTDLNVRGSV REDKALAFKL PSTGASDHDN SFTTPEQATS
301: LAVQAASVAS QWLDFLHQDL SGRLAESSST NVSGDVTSDK TATETHHIKW SAKFDQIKKA LCDEEKDLEQ SLNQVKEMQS RCNEGLRQMD EYSPFSSQSS
401: DSSFGKDGSS VETSMAVQAA AASIFSTCSF LLSMMKPPAT SS

Best Arabidopsis Sequence Match ( AT2G40630.1 )
(BLAST)

001: MEEQRGISSG VVSEPASNSV ISGEKRNGNG LDEKDELGSK RVKVPDLASD AKTSSLQSHG NSNSVQQPNL SSEKLSKVSK VLVAPDAEGI RRVVRENDVL
101: SKDIKPSSTV ETRTYLPKAK SISTDDNRRV VNSGKQALLE NHTVKTDDSK CRVVKNISLL KPRETTESVV SQRGAAEPSV SVPVGDKVSP FQMCSSADGS
201: LGESDSMRRW REMKRNGFLS GPLGGVAAPT STVVTTPVEV PAPKQQKNKR RGGESLKKKN DVPKKEQQLV DRFANVTAPS GLLTELNPGI INHVRTKKQV
301: CSIIEALIRS SNDDATTRER HGDFNVRDAI REDRALAFKL PSTGVSDNAI SITNPEQATS LAVEAATVAS QWLEFLQQDL SGRLSAVQDS RNRVQNILTT
401: ELPLLASSRE SSSNQANSLE MVTTNTSGDA SSDKAATETH QKRWTAKFDQ INKALYDEQR DLERSLNQVK EMQSRCNHGL RQMEEYSPFS SQSSDSSFGK
501: DGNQETSMAV QAAAASIFST CSFLLSMMKP PPTGS

Arabidopsis Description

At2g40630/T2P4.2 [Source:UniProtKB/TrEMBL;Acc:Q94EI6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.