Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70166 | Canola | nucleus | 92.64 | 96.28 |
| Bra028765.1-P | Field mustard | nucleus | 59.44 | 67.49 |
| AT5G05240.1 | Thale cress | nucleus | 59.44 | 56.42 |
| Zm00001d050601_P001 | Maize | nucleus | 17.69 | 41.01 |
| Zm00001d016658_P001 | Maize | nucleus | 16.9 | 39.17 |
| Zm00001d043415_P001 | Maize | cytosol | 2.78 | 35.0 |
| VIT_13s0067g03020.t01 | Wine grape | nucleus | 40.95 | 34.16 |
| Solyc06g048970.2.1 | Tomato | nucleus | 37.57 | 33.63 |
| PGSC0003DMT400042913 | Potato | nucleus | 37.38 | 33.45 |
| GSMUA_Achr8P21390_001 | Banana | nucleus | 31.61 | 33.4 |
| KRH04846 | Soybean | nucleus | 37.18 | 32.92 |
| Bra016979.1-P | Field mustard | nucleus | 19.28 | 32.23 |
| KRH15893 | Soybean | nucleus | 35.39 | 30.9 |
| GSMUA_Achr3P09810_001 | Banana | nucleus | 31.81 | 29.85 |
| Bra000196.1-P | Field mustard | nucleus | 25.45 | 28.96 |
| Zm00001d053987_P003 | Maize | nucleus | 31.21 | 28.14 |
| OQU84307 | Sorghum | nucleus | 31.41 | 28.06 |
| Zm00001d015148_P002 | Maize | nucleus | 30.82 | 27.68 |
| HORVU6Hr1G017100.1 | Barley | cytosol | 30.42 | 27.22 |
| TraesCS6D01G088000.1 | Wheat | nucleus | 29.62 | 26.56 |
| TraesCS6B01G123400.1 | Wheat | nucleus | 29.62 | 26.56 |
| TraesCS6A01G095400.1 | Wheat | nucleus | 29.62 | 26.51 |
| Os02t0132200-00 | Rice | plastid | 30.82 | 24.14 |
Protein Annotations
Description
AT5G05240 (E=7e-169) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP030365 (InterPro:IPR016953); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40630.1); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA10:-:15240279..15242321
Molecular Weight (calculated)
55090.3 Da
IEP (calculated)
7.683
GRAVY (calculated)
-0.629
Length
503 amino acids
Sequence
(BLAST)
(BLAST)
001: MGENDSVCGG FSLITRSDLK MGGNELDEKQ KLSHFGPVDT FRNSGNTGHA PKDTEQSQVC KVSQSFVKEG ASSEVFGQQV KPSSDKRIDV GCVAQKRSEL
101: SSVSSCVNDD LSTVCSSRRS DKPGSTDAYS ECGSSSVPVE ANDPMKLWKA MKENGFLSNP HGATSSSCVV SSSHGGIPAP RKRGRKSKTN NDAAMVMKKR
201: KIEIARKEEV DNRFARLAAP SGLLNELNPG IINHVRNKKQ VLSIIQSIVK SDKDSGRNYH HHSMRLNNTT AADDVNTGGA SRSDFSQGFK YGMPEDNYYD
301: EKCADGEENS KFSENASSLP TEDAASLNRD SVLTVKAATV ASQWLELLHQ DIKCRVSALR RSKKRVRAVV TTELPFLISK EFPADQENDP SVLFNGASRA
401: STVDNHKNRW MALFKQLEQT LSEEEKQLES WLNKVRELQS HCDQGLQHLS LSSGQNFLQL GMPLYSRAAD ALISDKDLAV RAAAASIYST CNFLASEENI
501: TCT
101: SSVSSCVNDD LSTVCSSRRS DKPGSTDAYS ECGSSSVPVE ANDPMKLWKA MKENGFLSNP HGATSSSCVV SSSHGGIPAP RKRGRKSKTN NDAAMVMKKR
201: KIEIARKEEV DNRFARLAAP SGLLNELNPG IINHVRNKKQ VLSIIQSIVK SDKDSGRNYH HHSMRLNNTT AADDVNTGGA SRSDFSQGFK YGMPEDNYYD
301: EKCADGEENS KFSENASSLP TEDAASLNRD SVLTVKAATV ASQWLELLHQ DIKCRVSALR RSKKRVRAVV TTELPFLISK EFPADQENDP SVLFNGASRA
401: STVDNHKNRW MALFKQLEQT LSEEEKQLES WLNKVRELQS HCDQGLQHLS LSSGQNFLQL GMPLYSRAAD ALISDKDLAV RAAAASIYST CNFLASEENI
501: TCT
001: MEEHDAVSGG CSPIPRSDLK IGGNELDERQ ELSKIEPVTP TLNSGNTVHG SKDVEKANGM SQVGKVSESF VTEGKNIKTE LLVGQEVKSS SSKLVLNTDV
101: DCDKRALLKR CDNADAVSSC LNDDLTSVCS SRISQKTSSM DVYSECGSSN GSVAKRDPMK VWTEMKQNGY LSNPNGGIST TSSSCLISSS HGGIPAPKKR
201: GRKTKINNDA AVAKKRKIER KEEVDRFARL AAPSGLLNEL NPGIINHVRN KKQVLSIIEN IVKSERDAGN YHSTLRHSNS ADGSPRKNLG DACRSEFYQV
301: FQYALPKDMY SMRYYAEKCA DDEFSEENNT VRSRFQVAGK FSENDSSLSS EDASDLNSAS VLTVNAATVA SQWLELLHQD IKGRVSALRR SRKRVRAVVT
401: IELPHLIRKE FPADQENDPT LLLGGASKAS TVDIHKSRWM TLFKQLEHKL SEEESQLESW LNQVRYMQSH CDEGLQHLSL SSGQNFLQLG MPLDSRAANA
501: LISDKDLVIK AAAASIYSTC SFLEENITCS
101: DCDKRALLKR CDNADAVSSC LNDDLTSVCS SRISQKTSSM DVYSECGSSN GSVAKRDPMK VWTEMKQNGY LSNPNGGIST TSSSCLISSS HGGIPAPKKR
201: GRKTKINNDA AVAKKRKIER KEEVDRFARL AAPSGLLNEL NPGIINHVRN KKQVLSIIEN IVKSERDAGN YHSTLRHSNS ADGSPRKNLG DACRSEFYQV
301: FQYALPKDMY SMRYYAEKCA DDEFSEENNT VRSRFQVAGK FSENDSSLSS EDASDLNSAS VLTVNAATVA SQWLELLHQD IKGRVSALRR SRKRVRAVVT
401: IELPHLIRKE FPADQENDPT LLLGGASKAS TVDIHKSRWM TLFKQLEHKL SEEESQLESW LNQVRYMQSH CDEGLQHLSL SSGQNFLQLG MPLDSRAANA
501: LISDKDLVIK AAAASIYSTC SFLEENITCS
Arabidopsis Description
Uncharacterised conserved protein (UCP030365) [Source:TAIR;Acc:AT5G05240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.