Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050601_P001 | Maize | nucleus | 17.41 | 48.39 |
| CDX98827 | Canola | nucleus | 28.69 | 48.32 |
| PGSC0003DMT400042913 | Potato | nucleus | 44.28 | 47.51 |
| Solyc06g048970.2.1 | Tomato | nucleus | 44.28 | 47.51 |
| Zm00001d016658_P001 | Maize | nucleus | 16.75 | 46.54 |
| CDY14124 | Canola | nucleus | 30.18 | 44.61 |
| Bra028765.1-P | Field mustard | nucleus | 32.01 | 43.57 |
| KRH04846 | Soybean | nucleus | 40.46 | 42.96 |
| GSMUA_Achr8P21390_001 | Banana | nucleus | 33.83 | 42.86 |
| KRH15893 | Soybean | nucleus | 40.8 | 42.71 |
| Bra009098.1-P | Field mustard | nucleus | 34.16 | 40.95 |
| CDX70166 | Canola | nucleus | 32.84 | 40.91 |
| AT5G05240.1 | Thale cress | nucleus | 34.0 | 38.68 |
| GSMUA_Achr3P09810_001 | Banana | nucleus | 34.16 | 38.43 |
| OQU84307 | Sorghum | nucleus | 33.83 | 36.23 |
| Zm00001d053987_P003 | Maize | nucleus | 33.5 | 36.2 |
| Zm00001d015148_P002 | Maize | nucleus | 33.5 | 36.07 |
| HORVU6Hr1G017100.1 | Barley | cytosol | 32.67 | 35.05 |
| TraesCS6B01G123400.1 | Wheat | nucleus | 32.5 | 34.94 |
| TraesCS6D01G088000.1 | Wheat | nucleus | 32.17 | 34.58 |
| TraesCS6A01G095400.1 | Wheat | nucleus | 32.17 | 34.52 |
| Zm00001d043415_P001 | Maize | cytosol | 2.16 | 32.5 |
| Os02t0132200-00 | Rice | plastid | 32.34 | 30.37 |
Protein Annotations
| ArrayExpress:VIT_13s0067g03020 | EMBL:FN595514 | EnsemblPlants:VIT_13s0067g03020.t01 | EnsemblPlantsGene:VIT_13s0067g03020 | EntrezGene:100267305 | EntrezGene:LOC100267305 |
| PANTHER:PTHR33924 | PANTHER:PTHR33924:SF1 | ProteinID:CCB49786 | ProteinID:CCB49786.1 | RefSeq:XP_002275231 | RefSeq:XP_002275231.1 |
| UniParc:UPI000210A3D9 | UniProt:F6HC74 | wikigene:100267305 | wikigene:LOC100267305 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr13:+:1612663..1617531
Molecular Weight (calculated)
67111.3 Da
IEP (calculated)
7.791
GRAVY (calculated)
-0.726
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSSSVNPR SDSKVMREKR SGEELGERSE MARKRVKMRD LDSVLRSEDI DTNYTKSSKT KGANGQEMSQ VTEVPVTMAS DAAHEATKIR DMLPPQRQLD
101: LNAKVCSARK LACDVTSACV EGNNKLHPLT KHDMEHDPNF VTSRGIGLDL NSEDVCSSVN QDPFYSYKKR DRVKSPDGVS ECASSTGPLE EKDPMKVWKE
201: MKQNGFLSST HGGIPVPKQR ARKNKQDVIK KKIELAKREQ VDRFTKIAAP SGLLNELNPG IINHVRNSKQ VHSIIEALVR SEQLENGHAG SKQASHSKSG
301: TKEISDEKKD PENVNVLGKT PLYPSHEDGP TKIIPLNPSN NMPANLQIRG NPMLVNKSMS LSSEDKGGDG DSRMIERRLV ARTSCASSST PTNEDEILAL
401: KLSSSQTKAS ENISSLSNDE PMNLNSVTSL SVKAATVASQ WLELLHQDIK GRLAALRRSK KRVRAVIHTE LPFLISKEFP SNQENNSSVS KDSAAECSNI
501: AVAEMHQARW SALFDQMDKS LFEEEKQLES WLNQVKEMQM HCERGLQHFQ WNLPHWQHPG TIINDPRPQM VDDSERELAI RAAAASIYST CNFLLSMENV
601: SCF
101: LNAKVCSARK LACDVTSACV EGNNKLHPLT KHDMEHDPNF VTSRGIGLDL NSEDVCSSVN QDPFYSYKKR DRVKSPDGVS ECASSTGPLE EKDPMKVWKE
201: MKQNGFLSST HGGIPVPKQR ARKNKQDVIK KKIELAKREQ VDRFTKIAAP SGLLNELNPG IINHVRNSKQ VHSIIEALVR SEQLENGHAG SKQASHSKSG
301: TKEISDEKKD PENVNVLGKT PLYPSHEDGP TKIIPLNPSN NMPANLQIRG NPMLVNKSMS LSSEDKGGDG DSRMIERRLV ARTSCASSST PTNEDEILAL
401: KLSSSQTKAS ENISSLSNDE PMNLNSVTSL SVKAATVASQ WLELLHQDIK GRLAALRRSK KRVRAVIHTE LPFLISKEFP SNQENNSSVS KDSAAECSNI
501: AVAEMHQARW SALFDQMDKS LFEEEKQLES WLNQVKEMQM HCERGLQHFQ WNLPHWQHPG TIINDPRPQM VDDSERELAI RAAAASIYST CNFLLSMENV
601: SCF
001: MEEHDAVSGG CSPIPRSDLK IGGNELDERQ ELSKIEPVTP TLNSGNTVHG SKDVEKANGM SQVGKVSESF VTEGKNIKTE LLVGQEVKSS SSKLVLNTDV
101: DCDKRALLKR CDNADAVSSC LNDDLTSVCS SRISQKTSSM DVYSECGSSN GSVAKRDPMK VWTEMKQNGY LSNPNGGIST TSSSCLISSS HGGIPAPKKR
201: GRKTKINNDA AVAKKRKIER KEEVDRFARL AAPSGLLNEL NPGIINHVRN KKQVLSIIEN IVKSERDAGN YHSTLRHSNS ADGSPRKNLG DACRSEFYQV
301: FQYALPKDMY SMRYYAEKCA DDEFSEENNT VRSRFQVAGK FSENDSSLSS EDASDLNSAS VLTVNAATVA SQWLELLHQD IKGRVSALRR SRKRVRAVVT
401: IELPHLIRKE FPADQENDPT LLLGGASKAS TVDIHKSRWM TLFKQLEHKL SEEESQLESW LNQVRYMQSH CDEGLQHLSL SSGQNFLQLG MPLDSRAANA
501: LISDKDLVIK AAAASIYSTC SFLEENITCS
101: DCDKRALLKR CDNADAVSSC LNDDLTSVCS SRISQKTSSM DVYSECGSSN GSVAKRDPMK VWTEMKQNGY LSNPNGGIST TSSSCLISSS HGGIPAPKKR
201: GRKTKINNDA AVAKKRKIER KEEVDRFARL AAPSGLLNEL NPGIINHVRN KKQVLSIIEN IVKSERDAGN YHSTLRHSNS ADGSPRKNLG DACRSEFYQV
301: FQYALPKDMY SMRYYAEKCA DDEFSEENNT VRSRFQVAGK FSENDSSLSS EDASDLNSAS VLTVNAATVA SQWLELLHQD IKGRVSALRR SRKRVRAVVT
401: IELPHLIRKE FPADQENDPT LLLGGASKAS TVDIHKSRWM TLFKQLEHKL SEEESQLESW LNQVRYMQSH CDEGLQHLSL SSGQNFLQLG MPLDSRAANA
501: LISDKDLVIK AAAASIYSTC SFLEENITCS
Arabidopsis Description
Uncharacterised conserved protein (UCP030365) [Source:TAIR;Acc:AT5G05240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.