CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028765.1-P	Field mustard	nucleus	78.92	72.69
CDX98827	Canola	nucleus	62.25	70.95
CDX70166	Canola	nucleus	65.2	54.96
AT5G05240.1	Thale cress	nucleus	61.03	46.98
Zm00001d050601_P001	Maize	nucleus	19.61	36.87
Zm00001d016658_P001	Maize	nucleus	18.63	35.02
CDY06973	Canola	nucleus	26.23	32.92
GSMUA_Achr8P21390_001	Banana	nucleus	37.01	31.72
Solyc06g048970.2.1	Tomato	nucleus	42.65	30.96
PGSC0003DMT400042913	Potato	nucleus	42.16	30.61
VIT_13s0067g03020.t01	Wine grape	nucleus	44.61	30.18
CDX93166	Canola	golgi, vacuole	25.25	29.77
KRH04846	Soybean	nucleus	39.95	28.7
KRH15893	Soybean	nucleus	39.22	27.78
Zm00001d043415_P001	Maize	cytosol	2.7	27.5
GSMUA_Achr3P09810_001	Banana	nucleus	35.78	27.24
OQU84307	Sorghum	nucleus	35.78	25.93
Zm00001d015148_P002	Maize	nucleus	35.05	25.54
Zm00001d053987_P003	Maize	nucleus	34.31	25.09
TraesCS6B01G123400.1	Wheat	nucleus	34.31	24.96
HORVU6Hr1G017100.1	Barley	cytosol	34.07	24.73
TraesCS6D01G088000.1	Wheat	nucleus	33.82	24.6
TraesCS6A01G095400.1	Wheat	nucleus	33.82	24.56
Os02t0132200-00	Rice	plastid	34.07	21.65

Protein Annotations

EnsemblPlants:CDY14124	EnsemblPlantsGene:GSBRNA2T00078669001	ncoils:Coil	PANTHER:PTHR33924	PANTHER:PTHR33924:SF1	ProteinID:CDY14124
ProteinID:CDY14124.1	SEG:seg	UniParc:UPI0004EB62CB	UniProt:A0A078FMN8	MapMan:35.2	:

Description

BnaC02g02410DBnaC02g02410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMN8]

Coordinates

chrLK032040:+:532821..535390

Molecular Weight (calculated)

45542.7 Da

IEP (calculated)

8.854

GRAVY (calculated)

-0.643

Length

408 amino acids

Sequence
(BLAST)

001: MDVSRGFSLI TRSDLKIVGN ELDEKPNERQ SFVKTVVDSD KGALVKRTEV RSGLSVSRSE KSCSTDVNSE CASSSNDPMK LWEAMKQNGF LSNPHGGVSA
101: SSSHGGIPAP PRKRCRRSKS NDATDMVKKR KVEVARKEEA ERFARLAAPS GLLNELNPGI INHVRNKRQV LSIIQSIVKS DKDSMRHHSK NLEDSYSMHY
201: HEEKCVSEDN DTKSGKYSEN ASSLSSEEAE GLNHASVLTV KAATVASQWL ELLHQDIKCR VSALRRSKKR VRAVVTTELP FLIMKEFPAD QENDPNLLIN
301: RASRSSTVDN HKNRWMALFN QLEQTLSEEE KQLENWLNQV RELQSHCDRG LQNLSLSSGQ NFLQLGMPLH SRAGDALLSD KDFVVRAAAA SIYSTCNFLA
401: SKENIAFT

Best Arabidopsis Sequence Match ( AT5G05240.2 )
(BLAST)

001: MSQVGKVSES FVTEGKNIKT ELLVGQEVKS SSSKLVLNTD VDCDKRALLK RCDNADAVSS CLNDDLTSVC SSRISQKTSS MDVYSECGSS NGSVAKRDPM
101: KVWTEMKQNG YLSNPNGGIS TTSSSCLISS SHGGIPAPKK RGRKTKINND AAVAKKRKIE RKEEVDRFAR LAAPSGLLNE LNPGIINHVR NKKQVLSIIE
201: NIVKSERDAG NYHSTLRHSN SADGSPRKNL GDACRSEFYQ VFQYALPKDM YSMRYYAEKC ADDEFSEENN TVRSRFQVAG KFSENDSSLS SEDASDLNSA
301: SVLTVNAATV ASQWLELLHQ DIKGRVSALR RSRKRVRAVV TIELPHLIRK EFPADQENDP TLLLGGASKA STVDIHKSRW MTLFKQLEHK LSEEESQLES
401: WLNQVRYMQS HCDEGLQHLS LSSGQNFLQL GMPLDSRAAN ALISDKDLVI KAAAASIYST CSFLEENITC S

Arabidopsis Description

Uncharacterised conserved protein (UCP030365) [Source:TAIR;Acc:AT5G05240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.