Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14124 | Canola | nucleus | 72.69 | 78.92 |
| Bra009098.1-P | Field mustard | nucleus | 67.49 | 59.44 |
| AT5G05240.1 | Thale cress | nucleus | 59.59 | 49.81 |
| Zm00001d050601_P001 | Maize | nucleus | 18.06 | 36.87 |
| Zm00001d016658_P001 | Maize | nucleus | 17.16 | 35.02 |
| Bra016979.1-P | Field mustard | nucleus | 22.35 | 32.89 |
| Solyc06g048970.2.1 | Tomato | nucleus | 41.08 | 32.38 |
| PGSC0003DMT400042913 | Potato | nucleus | 40.86 | 32.21 |
| VIT_13s0067g03020.t01 | Wine grape | nucleus | 43.57 | 32.01 |
| GSMUA_Achr8P21390_001 | Banana | nucleus | 33.86 | 31.51 |
| KRH04846 | Soybean | nucleus | 37.47 | 29.23 |
| KRH15893 | Soybean | nucleus | 36.79 | 28.3 |
| Zm00001d043415_P001 | Maize | cytosol | 2.48 | 27.5 |
| GSMUA_Achr3P09810_001 | Banana | nucleus | 32.28 | 26.68 |
| OQU84307 | Sorghum | nucleus | 33.41 | 26.29 |
| Zm00001d015148_P002 | Maize | nucleus | 32.96 | 26.07 |
| Bra000196.1-P | Field mustard | nucleus | 25.96 | 26.02 |
| Zm00001d053987_P003 | Maize | nucleus | 32.05 | 25.45 |
| TraesCS6B01G123400.1 | Wheat | nucleus | 31.38 | 24.78 |
| TraesCS6A01G095400.1 | Wheat | nucleus | 31.15 | 24.56 |
| HORVU6Hr1G017100.1 | Barley | cytosol | 30.93 | 24.38 |
| TraesCS6D01G088000.1 | Wheat | nucleus | 30.7 | 24.24 |
| Os02t0132200-00 | Rice | plastid | 31.15 | 21.5 |
Protein Annotations
Description
AT5G05240 (E=4e-118) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP030365 (InterPro:IPR016953); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40630.1); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA02:-:2144293..2146380
Molecular Weight (calculated)
48761.1 Da
IEP (calculated)
6.836
GRAVY (calculated)
-0.606
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVSRGLSLI TRSDLKIGSS ELDEKDIERQ SLGTSDNNKT ELLCSSSSKL ALKTDADCNN NGALVKSNDS VSTCLNDDLS SVCDKPGSSE CGSSSNDPMK
101: LWEAMKQNGF LSNPHGGVSV SSSHGGIPAP PRKRGRRSKS NDATDMVKKR KVEIARKEEA ERFARLAAPS GLLNELNPGI INHVRNKRQV LSIIQSIVES
201: DKDSGNVYHH HPMRHRKNLE GVYTDASRYD MPDGEFSEDN NTTADKLSEN ASSLSSEEAE GLNHASVLTV KDLHLAAATV ASQWLELLHQ DIKCRVSALR
301: RSKKRVRAVV TTELPFLIMK EFPADQENDP NLLTNGASRS STVVNHKNRW MALFNQLEQT LSEEEKQLEN WLNQVRELQS HCDRGLQNLS LSSGQNFLQL
401: GTPIHSRAGD ALLSDKDFVV RAAAASIYST CNFLASKENI AFT
101: LWEAMKQNGF LSNPHGGVSV SSSHGGIPAP PRKRGRRSKS NDATDMVKKR KVEIARKEEA ERFARLAAPS GLLNELNPGI INHVRNKRQV LSIIQSIVES
201: DKDSGNVYHH HPMRHRKNLE GVYTDASRYD MPDGEFSEDN NTTADKLSEN ASSLSSEEAE GLNHASVLTV KDLHLAAATV ASQWLELLHQ DIKCRVSALR
301: RSKKRVRAVV TTELPFLIMK EFPADQENDP NLLTNGASRS STVVNHKNRW MALFNQLEQT LSEEEKQLEN WLNQVRELQS HCDRGLQNLS LSSGQNFLQL
401: GTPIHSRAGD ALLSDKDFVV RAAAASIYST CNFLASKENI AFT
001: MEEHDAVSGG CSPIPRSDLK IGGNELDERQ ELSKIEPVTP TLNSGNTVHG SKDVEKANGM SQVGKVSESF VTEGKNIKTE LLVGQEVKSS SSKLVLNTDV
101: DCDKRALLKR CDNADAVSSC LNDDLTSVCS SRISQKTSSM DVYSECGSSN GSVAKRDPMK VWTEMKQNGY LSNPNGGIST TSSSCLISSS HGGIPAPKKR
201: GRKTKINNDA AVAKKRKIER KEEVDRFARL AAPSGLLNEL NPGIINHVRN KKQVLSIIEN IVKSERDAGN YHSTLRHSNS ADGSPRKNLG DACRSEFYQV
301: FQYALPKDMY SMRYYAEKCA DDEFSEENNT VRSRFQVAGK FSENDSSLSS EDASDLNSAS VLTVNAATVA SQWLELLHQD IKGRVSALRR SRKRVRAVVT
401: IELPHLIRKE FPADQENDPT LLLGGASKAS TVDIHKSRWM TLFKQLEHKL SEEESQLESW LNQVRYMQSH CDEGLQHLSL SSGQNFLQLG MPLDSRAANA
501: LISDKDLVIK AAAASIYSTC SFLEENITCS
101: DCDKRALLKR CDNADAVSSC LNDDLTSVCS SRISQKTSSM DVYSECGSSN GSVAKRDPMK VWTEMKQNGY LSNPNGGIST TSSSCLISSS HGGIPAPKKR
201: GRKTKINNDA AVAKKRKIER KEEVDRFARL AAPSGLLNEL NPGIINHVRN KKQVLSIIEN IVKSERDAGN YHSTLRHSNS ADGSPRKNLG DACRSEFYQV
301: FQYALPKDMY SMRYYAEKCA DDEFSEENNT VRSRFQVAGK FSENDSSLSS EDASDLNSAS VLTVNAATVA SQWLELLHQD IKGRVSALRR SRKRVRAVVT
401: IELPHLIRKE FPADQENDPT LLLGGASKAS TVDIHKSRWM TLFKQLEHKL SEEESQLESW LNQVRYMQSH CDEGLQHLSL SSGQNFLQLG MPLDSRAANA
501: LISDKDLVIK AAAASIYSTC SFLEENITCS
Arabidopsis Description
Uncharacterised conserved protein (UCP030365) [Source:TAIR;Acc:AT5G05240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.