Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06973 | Canola | nucleus | 71.1 | 65.85 |
| CDX93166 | Canola | golgi, vacuole | 67.77 | 58.96 |
| Zm00001d050601_P001 | Maize | nucleus | 22.26 | 30.88 |
| Zm00001d016658_P001 | Maize | nucleus | 21.93 | 30.41 |
| Bra000196.1-P | Field mustard | nucleus | 43.85 | 29.86 |
| AT2G40630.1 | Thale cress | nucleus | 48.84 | 27.48 |
| Bra028765.1-P | Field mustard | nucleus | 32.89 | 22.35 |
| GSMUA_Achr8P21390_001 | Banana | nucleus | 31.89 | 20.17 |
| Zm00001d043415_P001 | Maize | cytosol | 2.66 | 20.0 |
| Zm00001d015148_P002 | Maize | nucleus | 36.21 | 19.46 |
| Bra009098.1-P | Field mustard | nucleus | 32.23 | 19.28 |
| Zm00001d053987_P003 | Maize | nucleus | 35.55 | 19.18 |
| TraesCS6B01G123400.1 | Wheat | nucleus | 33.89 | 18.18 |
| HORVU6Hr1G017100.1 | Barley | cytosol | 33.89 | 18.15 |
| OQU84307 | Sorghum | nucleus | 33.89 | 18.12 |
| TraesCS6A01G095400.1 | Wheat | nucleus | 33.55 | 17.97 |
| TraesCS6D01G088000.1 | Wheat | nucleus | 33.22 | 17.83 |
| GSMUA_Achr3P09810_001 | Banana | nucleus | 30.23 | 16.98 |
| Os02t0132200-00 | Rice | plastid | 35.88 | 16.82 |
Protein Annotations
Description
AT2G40630 (E=4e-018) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP030365 (InterPro:IPR016953); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05240.1); Has 101 Blast hits to 95 proteins in 44 species: Archae - 0; Bacteria - 32; Metazoa - 24; Fungi - 6; Plants - 20; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Coordinates
chrA04:+:17292778..17294374
Molecular Weight (calculated)
33415.4 Da
IEP (calculated)
8.618
GRAVY (calculated)
-0.720
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPKRKMNQT FVLAKDDDRL VTNALPETRT VKDVTNCETR GGLHVDEWME MKRNGYLSGP LGGHVASRHV DSSNKTNQVP NKKKDQHVVA TAPPSRLLAG
101: LKPGIIKHVR SKEEVYSSLE ALIRDSARED RALDSKVSDH AISLTNTEQA KLLAVEAASV ASQWLEFLHQ DLSERLSAVK DSRKRVDDTL KAELPLLVSS
201: SKESSSNQES TSGDETVTKA HKIKWSAKFD EFKKRLNDEE KDLESTLNHV KDMQSRCSEG LRQMNEASCG KDGETNLAAA ASIFSTCRYL LSKMKPPPNS
301: S
101: LKPGIIKHVR SKEEVYSSLE ALIRDSARED RALDSKVSDH AISLTNTEQA KLLAVEAASV ASQWLEFLHQ DLSERLSAVK DSRKRVDDTL KAELPLLVSS
201: SKESSSNQES TSGDETVTKA HKIKWSAKFD EFKKRLNDEE KDLESTLNHV KDMQSRCSEG LRQMNEASCG KDGETNLAAA ASIFSTCRYL LSKMKPPPNS
301: S
001: MEEQRGISSG VVSEPASNSV ISGEKRNGNG LDEKDELGSK RVKVPDLASD AKTSSLQSHG NSNSVQQPNL SSEKLSKVSK VLVAPDAEGI RRVVRENDVL
101: SKDIKPSSTV ETRTYLPKAK SISTDDNRRV VNSGKQALLE NHTVKTDDSK CRVVKNISLL KPRETTESVV SQRGAAEPSV SVPVGDKVSP FQMCSSADGS
201: LGESDSMRRW REMKRNGFLS GPLGGVAAPT STVVTTPVEV PAPKQQKNKR RGGESLKKKN DVPKKEQQLV DRFANVTAPS GLLTELNPGI INHVRTKKQV
301: CSIIEALIRS SNDDATTRER HGDFNVRDAI REDRALAFKL PSTGVSDNAI SITNPEQATS LAVEAATVAS QWLEFLQQDL SGRLSAVQDS RNRVQNILTT
401: ELPLLASSRE SSSNQANSLE MVTTNTSGDA SSDKAATETH QKRWTAKFDQ INKALYDEQR DLERSLNQVK EMQSRCNHGL RQMEEYSPFS SQSSDSSFGK
501: DGNQETSMAV QAAAASIFST CSFLLSMMKP PPTGS
101: SKDIKPSSTV ETRTYLPKAK SISTDDNRRV VNSGKQALLE NHTVKTDDSK CRVVKNISLL KPRETTESVV SQRGAAEPSV SVPVGDKVSP FQMCSSADGS
201: LGESDSMRRW REMKRNGFLS GPLGGVAAPT STVVTTPVEV PAPKQQKNKR RGGESLKKKN DVPKKEQQLV DRFANVTAPS GLLTELNPGI INHVRTKKQV
301: CSIIEALIRS SNDDATTRER HGDFNVRDAI REDRALAFKL PSTGVSDNAI SITNPEQATS LAVEAATVAS QWLEFLQQDL SGRLSAVQDS RNRVQNILTT
401: ELPLLASSRE SSSNQANSLE MVTTNTSGDA SSDKAATETH QKRWTAKFDQ INKALYDEQR DLERSLNQVK EMQSRCNHGL RQMEEYSPFS SQSSDSSFGK
501: DGNQETSMAV QAAAASIFST CSFLLSMMKP PPTGS
Arabidopsis Description
At2g40630/T2P4.2 [Source:UniProtKB/TrEMBL;Acc:Q94EI6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.