Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G095400.1 | Wheat | nucleus | 97.33 | 97.15 |
| TraesCS6B01G123400.1 | Wheat | nucleus | 93.58 | 93.58 |
| HORVU6Hr1G017100.1 | Barley | cytosol | 92.87 | 92.7 |
| Zm00001d043415_P001 | Maize | cytosol | 6.06 | 85.0 |
| Zm00001d016658_P001 | Maize | nucleus | 27.99 | 72.35 |
| Zm00001d050601_P001 | Maize | nucleus | 27.99 | 72.35 |
| Zm00001d015148_P002 | Maize | nucleus | 69.7 | 69.82 |
| OQU84307 | Sorghum | nucleus | 70.05 | 69.8 |
| Zm00001d053987_P003 | Maize | nucleus | 68.63 | 69.0 |
| Os02t0132200-00 | Rice | plastid | 70.23 | 61.37 |
| GSMUA_Achr8P21390_001 | Banana | nucleus | 38.68 | 45.59 |
| GSMUA_Achr3P09810_001 | Banana | nucleus | 40.29 | 42.16 |
| CDX98827 | Canola | nucleus | 23.89 | 37.43 |
| Solyc06g048970.2.1 | Tomato | nucleus | 35.47 | 35.41 |
| PGSC0003DMT400042913 | Potato | nucleus | 35.47 | 35.41 |
| CDY14124 | Canola | nucleus | 24.6 | 33.82 |
| CDY06973 | Canola | nucleus | 19.25 | 33.23 |
| Bra016979.1-P | Field mustard | nucleus | 17.83 | 33.22 |
| VIT_13s0067g03020.t01 | Wine grape | nucleus | 34.58 | 32.17 |
| Bra000196.1-P | Field mustard | nucleus | 24.6 | 31.22 |
| CDX93166 | Canola | golgi, vacuole | 19.07 | 30.92 |
| Bra028765.1-P | Field mustard | nucleus | 24.24 | 30.7 |
| AT2G40630.1 | Thale cress | nucleus | 28.7 | 30.09 |
| CDX70166 | Canola | nucleus | 25.67 | 29.75 |
| Bra009098.1-P | Field mustard | nucleus | 26.56 | 29.62 |
| AT5G05240.1 | Thale cress | nucleus | 27.63 | 29.25 |
| KRH04846 | Soybean | nucleus | 29.23 | 28.87 |
| KRH15893 | Soybean | nucleus | 29.06 | 28.3 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G088000.1 | EnsemblPlantsGene:TraesCS6D01G088000 | InterPro:UCP030365 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF1 | PIRSF:PIRSF030365 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:53552616..53555664
Molecular Weight (calculated)
60613.7 Da
IEP (calculated)
8.220
GRAVY (calculated)
-0.605
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPAGPRSAP TDPAGSGAPP PPTAEELSRR AAGSGGGGAA EACGAAPAAQ LGDPRVGILE SSDKAQGSVH PCNKKDIPQF SAEGATKCAY GVPSLPRTGA
101: LLQLEPACLT LGRAPDAVLA GSLHDANPLA RGKENIRTDL QPKPDAKRGE NRMRDAPLGL DLNRVGSSDA AELNPFFPYK KLGQSKVSDP SECGSTTGAA
201: GESESHRKWR EMKQNGFLSS THGTAVVPKP RGRPPKRKRD DELKRSTSTQ NEQTKFTKVA APSGLLSGLN PGIINHVRNS KQVYSIIKAM VRSEELENAS
301: QPGLAGQTGE RGKEVIERIQ DQKYGDSLMK CHFMMEGNNA MFQHGLPTAS RFLAEDGDNL KLQLSSTVTM ASDRTCSTLD HESQHDYMTV LSVKAASVAS
401: QWLELLQQDI RGRLAALKRS RKRVRNALQT ELPHLISTEF SSRQENEPSI AHSSEAGPTG KTASEEHVAR WRSLFLQMER TLQEEGRHLE IRLKEVQGML
501: QNCDKGLKQV TCEAPLLGPM AELWKLKNPE ISESEWAVQA AAASIYSTCN LVMKTENVSC F
101: LLQLEPACLT LGRAPDAVLA GSLHDANPLA RGKENIRTDL QPKPDAKRGE NRMRDAPLGL DLNRVGSSDA AELNPFFPYK KLGQSKVSDP SECGSTTGAA
201: GESESHRKWR EMKQNGFLSS THGTAVVPKP RGRPPKRKRD DELKRSTSTQ NEQTKFTKVA APSGLLSGLN PGIINHVRNS KQVYSIIKAM VRSEELENAS
301: QPGLAGQTGE RGKEVIERIQ DQKYGDSLMK CHFMMEGNNA MFQHGLPTAS RFLAEDGDNL KLQLSSTVTM ASDRTCSTLD HESQHDYMTV LSVKAASVAS
401: QWLELLQQDI RGRLAALKRS RKRVRNALQT ELPHLISTEF SSRQENEPSI AHSSEAGPTG KTASEEHVAR WRSLFLQMER TLQEEGRHLE IRLKEVQGML
501: QNCDKGLKQV TCEAPLLGPM AELWKLKNPE ISESEWAVQA AAASIYSTCN LVMKTENVSC F
001: MEEHDAVSGG CSPIPRSDLK IGGNELDERQ ELSKIEPVTP TLNSGNTVHG SKDVEKANGM SQVGKVSESF VTEGKNIKTE LLVGQEVKSS SSKLVLNTDV
101: DCDKRALLKR CDNADAVSSC LNDDLTSVCS SRISQKTSSM DVYSECGSSN GSVAKRDPMK VWTEMKQNGY LSNPNGGIST TSSSCLISSS HGGIPAPKKR
201: GRKTKINNDA AVAKKRKIER KEEVDRFARL AAPSGLLNEL NPGIINHVRN KKQVLSIIEN IVKSERDAGN YHSTLRHSNS ADGSPRKNLG DACRSEFYQV
301: FQYALPKDMY SMRYYAEKCA DDEFSEENNT VRSRFQVAGK FSENDSSLSS EDASDLNSAS VLTVNAATVA SQWLELLHQD IKGRVSALRR SRKRVRAVVT
401: IELPHLIRKE FPADQENDPT LLLGGASKAS TVDIHKSRWM TLFKQLEHKL SEEESQLESW LNQVRYMQSH CDEGLQHLSL SSGQNFLQLG MPLDSRAANA
501: LISDKDLVIK AAAASIYSTC SFLEENITCS
101: DCDKRALLKR CDNADAVSSC LNDDLTSVCS SRISQKTSSM DVYSECGSSN GSVAKRDPMK VWTEMKQNGY LSNPNGGIST TSSSCLISSS HGGIPAPKKR
201: GRKTKINNDA AVAKKRKIER KEEVDRFARL AAPSGLLNEL NPGIINHVRN KKQVLSIIEN IVKSERDAGN YHSTLRHSNS ADGSPRKNLG DACRSEFYQV
301: FQYALPKDMY SMRYYAEKCA DDEFSEENNT VRSRFQVAGK FSENDSSLSS EDASDLNSAS VLTVNAATVA SQWLELLHQD IKGRVSALRR SRKRVRAVVT
401: IELPHLIRKE FPADQENDPT LLLGGASKAS TVDIHKSRWM TLFKQLEHKL SEEESQLESW LNQVRYMQSH CDEGLQHLSL SSGQNFLQLG MPLDSRAANA
501: LISDKDLVIK AAAASIYSTC SFLEENITCS
Arabidopsis Description
Uncharacterised conserved protein (UCP030365) [Source:TAIR;Acc:AT5G05240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.