Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98827 | Canola | nucleus | 46.42 | 68.72 |
| CDY14124 | Canola | nucleus | 46.98 | 61.03 |
| Bra028765.1-P | Field mustard | nucleus | 49.81 | 59.59 |
| Bra009098.1-P | Field mustard | nucleus | 56.42 | 59.44 |
| CDX70166 | Canola | nucleus | 53.21 | 58.26 |
| Zm00001d050601_P001 | Maize | nucleus | 16.23 | 39.63 |
| Zm00001d016658_P001 | Maize | nucleus | 15.47 | 37.79 |
| Zm00001d043415_P001 | Maize | cytosol | 2.64 | 35.0 |
| VIT_13s0067g03020.t01 | Wine grape | nucleus | 38.68 | 34.0 |
| Solyc06g048970.2.1 | Tomato | nucleus | 35.85 | 33.81 |
| PGSC0003DMT400042913 | Potato | nucleus | 35.47 | 33.45 |
| GSMUA_Achr8P21390_001 | Banana | nucleus | 29.25 | 32.56 |
| KRH04846 | Soybean | nucleus | 32.26 | 30.11 |
| KRH15893 | Soybean | nucleus | 31.51 | 28.99 |
| GSMUA_Achr3P09810_001 | Banana | nucleus | 28.87 | 28.54 |
| Zm00001d015148_P002 | Maize | nucleus | 30.0 | 28.39 |
| OQU84307 | Sorghum | nucleus | 30.0 | 28.24 |
| Zm00001d053987_P003 | Maize | nucleus | 29.62 | 28.14 |
| AT2G40630.1 | Thale cress | nucleus | 28.3 | 28.04 |
| TraesCS6D01G088000.1 | Wheat | nucleus | 29.25 | 27.63 |
| TraesCS6B01G123400.1 | Wheat | nucleus | 29.25 | 27.63 |
| HORVU6Hr1G017100.1 | Barley | cytosol | 29.06 | 27.4 |
| TraesCS6A01G095400.1 | Wheat | nucleus | 28.87 | 27.22 |
| Os02t0132200-00 | Rice | plastid | 27.74 | 22.9 |
Protein Annotations
| MapMan:35.2 | EntrezGene:830406 | UniProt:A0A178UAP6 | ProteinID:AED90845.1 | ArrayExpress:AT5G05240 | EnsemblPlantsGene:AT5G05240 |
| RefSeq:AT5G05240 | TAIR:AT5G05240 | RefSeq:AT5G05240-TAIR-G | EnsemblPlants:AT5G05240.1 | TAIR:AT5G05240.1 | Unigene:At.50431 |
| ncoils:Coil | UniProt:F4JZ91 | GO:GO:0008150 | RefSeq:NP_196143.2 | ProteinID:OAO90705.1 | PIRSF:PIRSF030365 |
| PO:PO:0000293 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF1 | InterPro:UCP030365 | UniParc:UPI000034F228 | SEG:seg |
Description
Uncharacterised conserved protein (UCP030365) [Source:TAIR;Acc:AT5G05240]
Coordinates
chr5:-:1553799..1556605
Molecular Weight (calculated)
58278.5 Da
IEP (calculated)
7.278
GRAVY (calculated)
-0.567
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEHDAVSGG CSPIPRSDLK IGGNELDERQ ELSKIEPVTP TLNSGNTVHG SKDVEKANGM SQVGKVSESF VTEGKNIKTE LLVGQEVKSS SSKLVLNTDV
101: DCDKRALLKR CDNADAVSSC LNDDLTSVCS SRISQKTSSM DVYSECGSSN GSVAKRDPMK VWTEMKQNGY LSNPNGGIST TSSSCLISSS HGGIPAPKKR
201: GRKTKINNDA AVAKKRKIER KEEVDRFARL AAPSGLLNEL NPGIINHVRN KKQVLSIIEN IVKSERDAGN YHSTLRHSNS ADGSPRKNLG DACRSEFYQV
301: FQYALPKDMY SMRYYAEKCA DDEFSEENNT VRSRFQVAGK FSENDSSLSS EDASDLNSAS VLTVNAATVA SQWLELLHQD IKGRVSALRR SRKRVRAVVT
401: IELPHLIRKE FPADQENDPT LLLGGASKAS TVDIHKSRWM TLFKQLEHKL SEEESQLESW LNQVRYMQSH CDEGLQHLSL SSGQNFLQLG MPLDSRAANA
501: LISDKDLVIK AAAASIYSTC SFLEENITCS
101: DCDKRALLKR CDNADAVSSC LNDDLTSVCS SRISQKTSSM DVYSECGSSN GSVAKRDPMK VWTEMKQNGY LSNPNGGIST TSSSCLISSS HGGIPAPKKR
201: GRKTKINNDA AVAKKRKIER KEEVDRFARL AAPSGLLNEL NPGIINHVRN KKQVLSIIEN IVKSERDAGN YHSTLRHSNS ADGSPRKNLG DACRSEFYQV
301: FQYALPKDMY SMRYYAEKCA DDEFSEENNT VRSRFQVAGK FSENDSSLSS EDASDLNSAS VLTVNAATVA SQWLELLHQD IKGRVSALRR SRKRVRAVVT
401: IELPHLIRKE FPADQENDPT LLLGGASKAS TVDIHKSRWM TLFKQLEHKL SEEESQLESW LNQVRYMQSH CDEGLQHLSL SSGQNFLQLG MPLDSRAANA
501: LISDKDLVIK AAAASIYSTC SFLEENITCS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.