Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s1188g00010.t01 | Wine grape | cytosol | 71.09 | 74.39 |
| KRH59375 | Soybean | nucleus | 17.97 | 24.13 |
| KRH43214 | Soybean | nucleus | 17.45 | 22.33 |
| Bra024356.1-P | Field mustard | cytosol | 7.81 | 21.9 |
| Bra006048.1-P | Field mustard | cytosol | 7.81 | 20.83 |
| CDY08819 | Canola | nucleus | 16.41 | 19.63 |
| CDY14541 | Canola | nucleus | 15.36 | 19.22 |
| CDX81159 | Canola | nucleus | 14.06 | 18.95 |
| AT5G65120.1 | Thale cress | nucleus | 15.36 | 18.61 |
| CDX81268 | Canola | nucleus | 14.58 | 18.42 |
| Bra037805.1-P | Field mustard | cytosol | 14.06 | 18.31 |
| CDX78368 | Canola | nucleus | 13.28 | 18.09 |
| AT5G10110.1 | Thale cress | nucleus | 15.1 | 18.07 |
| CDY18686 | Canola | cytosol | 13.02 | 16.95 |
| TraesCS6D01G281500.1 | Wheat | cytosol, nucleus, plastid | 14.06 | 16.82 |
| TraesCS6B01G331200.2 | Wheat | cytosol, mitochondrion, nucleus | 14.06 | 16.82 |
| Os02t0752300-01 | Rice | nucleus | 14.06 | 16.41 |
| PGSC0003DMT400053153 | Potato | nucleus | 15.36 | 16.39 |
| Solyc04g054900.2.1 | Tomato | nucleus | 15.1 | 16.16 |
| TraesCS6A01G302100.1 | Wheat | cytosol | 14.32 | 15.99 |
| HORVU0Hr1G017100.2 | Barley | cytosol | 14.84 | 15.79 |
| OQU85411 | Sorghum | nucleus | 12.24 | 14.16 |
| Zm00001d052230_P001 | Maize | nucleus | 11.98 | 13.9 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 2.86 | 10.48 |
Protein Annotations
| ArrayExpress:VIT_00s0662g00020 | EnsemblPlants:VIT_00s0662g00020.t01 | EnsemblPlantsGene:VIT_00s0662g00020 | ncoils:Coil | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF2 |
| ProteinID:CCB48426.1 | SEG:seg | UniParc:UPI000210A6BE | UniProt:F6H883 | MapMan:35.2 | : |
Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6H883]
Coordinates
chrUn:+:33755782..33757419
Molecular Weight (calculated)
30706.1 Da
IEP (calculated)
5.446
GRAVY (calculated)
-0.351
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSSDSSADG LRKNRLVLAD LTNQTGKRGF QFISGNRGVK SGDGHGNIVD YKQGDLEFAK RVCQGVENLM KGKCNTNCGL NGDDEDLSLL KGKKVCGLRE
101: NISSLISNIP KEIKEPSNLL DNSTGIALGG VVIPSDKEVG NASRDSCPSS GSMPTGSEPS ESEGYNFGEK CQDDDQIIAS DVTQKGPSLG SCGNDGKGAP
201: VVDMPNRYGS VDFSRFAESQ GSKSFELGRC TGLKNDACSN LNVDASMLKA CSCPFCLKAA YIWSDLHYQD IKGRIAXXXX XXXXXXXXXX XXXXXXXXXX
301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXIPKFNFH FLVE
101: NISSLISNIP KEIKEPSNLL DNSTGIALGG VVIPSDKEVG NASRDSCPSS GSMPTGSEPS ESEGYNFGEK CQDDDQIIAS DVTQKGPSLG SCGNDGKGAP
201: VVDMPNRYGS VDFSRFAESQ GSKSFELGRC TGLKNDACSN LNVDASMLKA CSCPFCLKAA YIWSDLHYQD IKGRIAXXXX XXXXXXXXXX XXXXXXXXXX
301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXIPKFNFH FLVE
001: MTEDSSKSVS EQTRPVLSDL TNLPKKRGIS SILGDLLDES GKTVAHEVSK EKFSKRLCLV VDDLVKENAT PLDTIQGSCS FDKNTSGDAV DKEEYHDAVM
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q
Arabidopsis Description
DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q8VZV8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.