Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024356.1-P | Field mustard | cytosol | 34.38 | 79.56 |
| CDY14541 | Canola | nucleus | 61.83 | 63.84 |
| CDY08819 | Canola | nucleus | 58.68 | 57.94 |
| CDX81268 | Canola | nucleus | 54.26 | 56.58 |
| Bra037805.1-P | Field mustard | cytosol | 52.37 | 56.27 |
| CDY18686 | Canola | cytosol | 50.16 | 53.9 |
| AT5G10110.1 | Thale cress | nucleus | 41.96 | 41.43 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 11.67 | 35.24 |
| KRH43214 | Soybean | nucleus | 26.81 | 28.33 |
| VIT_00s1188g00010.t01 | Wine grape | cytosol | 30.6 | 26.43 |
| KRH59375 | Soybean | nucleus | 23.34 | 25.87 |
| Os02t0752300-01 | Rice | nucleus | 25.87 | 24.92 |
| TraesCS6B01G331200.2 | Wheat | cytosol, mitochondrion, nucleus | 24.61 | 24.3 |
| TraesCS6D01G281500.1 | Wheat | cytosol, nucleus, plastid | 24.29 | 23.99 |
| OQU85411 | Sorghum | nucleus | 24.92 | 23.8 |
| Zm00001d052230_P001 | Maize | nucleus | 24.61 | 23.57 |
| PGSC0003DMT400053153 | Potato | nucleus | 25.55 | 22.5 |
| Solyc04g054900.2.1 | Tomato | nucleus | 24.92 | 22.01 |
| TraesCS6A01G302100.1 | Wheat | cytosol | 23.34 | 21.51 |
| HORVU0Hr1G017100.2 | Barley | cytosol | 23.66 | 20.78 |
| VIT_00s0662g00020.t01 | Wine grape | cytosol, nucleus | 18.61 | 15.36 |
Protein Annotations
| MapMan:35.2 | EntrezGene:836636 | ProteinID:AED98005.1 | ArrayExpress:AT5G65120 | EnsemblPlantsGene:AT5G65120 | RefSeq:AT5G65120 |
| TAIR:AT5G65120 | RefSeq:AT5G65120-TAIR-G | EnsemblPlants:AT5G65120.1 | TAIR:AT5G65120.1 | UniProt:B4F7Q0 | EMBL:BT033133 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0032774 | RefSeq:NP_569006.1 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF2 | UniParc:UPI000016293A |
| SEG:seg | : | : | : | : | : |
Description
At5g65120 [Source:UniProtKB/TrEMBL;Acc:B4F7Q0]
Coordinates
chr5:+:26012775..26014739
Molecular Weight (calculated)
34803.3 Da
IEP (calculated)
4.515
GRAVY (calculated)
-0.662
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGDWCSLVV SKETRVALCD MTNLPSKRGL SAILGDLLLK SGDDSGKSLA AREGSGVKFS KRLCLVVDDL VKESTRTSDT NEASSSEDKI SYDCDSENLD
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.