Factsheet for Zm00001d052230_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015148_P002
Zm00001d016658_P001
Zm00001d043415_P001
Zm00001d050601_P001
Zm00001d053987_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10110.1	Zm00001d015148_P002	AT2G40630.1	21798944
AT5G10110.1	Zm00001d016658_P001	AT2G40630.1	21798944
AT5G10110.1	Zm00001d043415_P001	AT2G40630.1	21798944
AT5G10110.1	Zm00001d050601_P001	AT2G40630.1	21798944
AT5G10110.1	Zm00001d053987_P003	AT2G40630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85411	Sorghum	nucleus	85.5	85.24
Os02t0752300-01	Rice	nucleus	57.4	57.75
TraesCS6B01G331200.2	Wheat	cytosol, mitochondrion, nucleus	55.59	57.32
TraesCS6D01G281500.1	Wheat	cytosol, nucleus, plastid	54.68	56.39
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	17.52	55.24
TraesCS6A01G302100.1	Wheat	cytosol	53.78	51.74
HORVU0Hr1G017100.2	Barley	cytosol	53.17	48.75
Bra024356.1-P	Field mustard	cytosol	17.52	42.34
Bra006048.1-P	Field mustard	cytosol	15.71	36.11
Bra037805.1-P	Field mustard	cytosol	26.28	29.49
CDX81268	Canola	nucleus	26.89	29.28
CDY18686	Canola	cytosol	25.38	28.47
CDX81159	Canola	nucleus	23.87	27.72
CDX78368	Canola	nucleus	23.26	27.3
CDY14541	Canola	nucleus	24.77	26.71
CDY08819	Canola	nucleus	25.38	26.17
KRH43214	Soybean	nucleus	23.57	26.0
KRH59375	Soybean	nucleus	22.36	25.87
AT5G65120.1	Thale cress	nucleus	23.57	24.61
AT5G10110.1	Thale cress	nucleus	22.96	23.68
VIT_00s1188g00010.t01	Wine grape	cytosol	24.17	21.8
Solyc04g054900.2.1	Tomato	nucleus	19.94	18.38
PGSC0003DMT400053153	Potato	nucleus	19.94	18.33
VIT_00s0662g00020.t01	Wine grape	cytosol, nucleus	13.9	11.98

Protein Annotations

EMBL:BT061228	EMBL:EU961351	EnsemblPlants:Zm00001d052230_P001	EnsemblPlants:Zm00001d052230_T001	EnsemblPlantsGene:Zm00001d052230	EntrezGene:100276322
PANTHER:PTHR33924	PANTHER:PTHR33924:SF2	ProteinID:AQK56504.1	SEG:seg	UniParc:UPI000182C75E	UniProt:B6T8N6
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:184114356..184118862

Molecular Weight (calculated)

36429.3 Da

IEP (calculated)

5.802

GRAVY (calculated)

-0.617

Length

331 amino acids

Sequence
(BLAST)

001: MAENTHGSGR HVLGDLTNVI CKRAATSDLE KSTGGIKIRR IEKTGTRKEY DANAKASSIG KGIVFGHLFD DVAREKFQSH SIFQNSRVQH IAAEAAGLLS
101: KEANDSKNHY ASIGPLDLSD KEQDSSLESE DDYDDEDNDE TNGELLHHFF SSELANKMST NDGECLTQEE IVGSSGNQKP LSSLDATTGG DLPISSAQHA
201: SVRTGGLEEA VAPKSCACSF CLKAAFMWMD LHYQDARSRL SVLKKSIKFA RSLEEKCRGN EYAANVAGYE SKRAVGVEFE LSQQQRSLFL YTENALVRES
301: TQLHSAFVKL KELRENCKTD LETLSNSSMR K

Best Arabidopsis Sequence Match ( AT5G65120.1 )
(BLAST)

001: MTGDWCSLVV SKETRVALCD MTNLPSKRGL SAILGDLLLK SGDDSGKSLA AREGSGVKFS KRLCLVVDDL VKESTRTSDT NEASSSEDKI SYDCDSENLD
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT

Arabidopsis Description

At5g65120 [Source:UniProtKB/TrEMBL;Acc:B4F7Q0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.