Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000196.1-P | |
| Bra016979.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10110.1 | Bra000196.1-P | AT2G40630.1 | 21798944 |
| AT5G10110.1 | Bra016979.1-P | AT2G40630.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024356.1-P | Field mustard | cytosol | 66.67 | 70.07 |
| CDX78368 | Canola | nucleus | 100.0 | 51.06 |
| CDX81159 | Canola | nucleus | 96.53 | 48.77 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 28.47 | 39.05 |
| AT5G10110.1 | Thale cress | nucleus | 68.75 | 30.84 |
| Bra037805.1-P | Field mustard | cytosol | 59.72 | 29.15 |
| VIT_00s1188g00010.t01 | Wine grape | cytosol | 56.94 | 22.34 |
| KRH43214 | Soybean | nucleus | 45.14 | 21.67 |
| KRH59375 | Soybean | nucleus | 40.28 | 20.28 |
| Os02t0752300-01 | Rice | nucleus | 42.36 | 18.54 |
| Solyc04g054900.2.1 | Tomato | nucleus | 40.97 | 16.43 |
| TraesCS6D01G281500.1 | Wheat | cytosol, nucleus, plastid | 36.11 | 16.2 |
| TraesCS6B01G331200.2 | Wheat | cytosol, mitochondrion, nucleus | 36.11 | 16.2 |
| PGSC0003DMT400053153 | Potato | nucleus | 40.28 | 16.11 |
| OQU85411 | Sorghum | nucleus | 36.81 | 15.96 |
| Zm00001d052230_P001 | Maize | nucleus | 36.11 | 15.71 |
| TraesCS6A01G302100.1 | Wheat | cytosol | 34.72 | 14.53 |
| HORVU0Hr1G017100.2 | Barley | cytosol | 35.42 | 14.13 |
| VIT_00s0662g00020.t01 | Wine grape | cytosol, nucleus | 20.83 | 7.81 |
Protein Annotations
Description
AT5G10110 (E=6e-050) | unknown protein
Coordinates
chrA03:-:1757053..1757770
Molecular Weight (calculated)
16222.3 Da
IEP (calculated)
7.898
GRAVY (calculated)
-0.576
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRCSNVGKE ERVNVNMGDD DDLIKSCSCS FCLKAAYIWS DLHYQDIKGR LSALKKSQKV ASGLIQRNDK EKQPTGFHSL VNSVGAAKLE SDLMAQWRSL
101: FLGMGDILAH ESNHLQNSFM TMKDLREDCK IDLERATKTP QHNT
101: FLGMGDILAH ESNHLQNSFM TMKDLREDCK IDLERATKTP QHNT
001: MTEDSSKSVS EQTRPVLSDL TNLPKKRGIS SILGDLLDES GKTVAHEVSK EKFSKRLCLV VDDLVKENAT PLDTIQGSCS FDKNTSGDAV DKEEYHDAVM
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q
Arabidopsis Description
DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q8VZV8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.