Factsheet for PGSC0003DMT400053153

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g054900.2.1	Tomato	nucleus	95.28	95.54
Bra024356.1-P	Field mustard	cytosol	16.39	43.07
Bra006048.1-P	Field mustard	cytosol	16.11	40.28
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	9.44	32.38
CDX78368	Canola	nucleus	21.94	28.01
CDX81159	Canola	nucleus	21.94	27.72
VIT_00s1188g00010.t01	Wine grape	cytosol	27.22	26.7
CDY08819	Canola	nucleus	23.06	25.86
Os02t0752300-01	Rice	nucleus	23.61	25.84
AT5G65120.1	Thale cress	nucleus	22.5	25.55
TraesCS6D01G281500.1	Wheat	cytosol, nucleus, plastid	22.78	25.55
CDY14541	Canola	nucleus	21.67	25.41
CDY18686	Canola	cytosol	20.56	25.08
KRH59375	Soybean	nucleus	19.72	24.83
Bra037805.1-P	Field mustard	cytosol	20.28	24.75
CDX81268	Canola	nucleus	20.56	24.34
KRH43214	Soybean	nucleus	20.28	24.33
TraesCS6B01G331200.2	Wheat	cytosol, mitochondrion, nucleus	21.67	24.3
AT5G10110.1	Thale cress	nucleus	20.0	22.43
OQU85411	Sorghum	nucleus	20.0	21.69
TraesCS6A01G302100.1	Wheat	cytosol	20.56	21.51
HORVU0Hr1G017100.2	Barley	cytosol	21.39	21.33
Zm00001d052230_P001	Maize	nucleus	18.33	19.94
VIT_00s0662g00020.t01	Wine grape	cytosol, nucleus	16.39	15.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400053153	EnsemblPlantsGene:PGSC0003DMG400020626	EntrezGene:102591693	PANTHER:PTHR33924	PANTHER:PTHR33924:SF2	PGSC:PGSC0003DMG400020626
RefSeq:XP_006355364.1	RefSeq:XP_006355365.1	SEG:seg	UniParc:UPI000296283B	UniProt:M1BUH7	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020626]

Coordinates

chr4:-:51620834..51624602

Molecular Weight (calculated)

38868.2 Da

IEP (calculated)

4.441

GRAVY (calculated)

-0.574

Length

360 amino acids

Sequence
(BLAST)

001: MDEDNAVERC PKSRPVLGNI TNQLGNKRPF SALLGNSSLK CVDKGNENLG VKVVLVDDGD NAKRVCVGPR PCSKIKSSKV DVVSGISNIP NDNQDPSLLR
101: VDSATAICQS TIGDNNENND ACGSAIEIVN DREIIPKKNS EVINDMDGLV TGVPVPALSG TDDHDAARSC EINDDSEGTE SEDMFPNGPD ELGLDNLVMS
201: QSGSVDLARL PDSQESRVKL ETCTGTQTCE DNSGLSASIE SIKACSCTFC TKAAYIWLDL HYQDTKGRIS AIKKSQREAS LLVERSGKGK ELQKEGPEKN
301: TEAANLESSL MGHWKSLFQH MEHIFQREAD QLEGSLVALT DLKDRCKTEL DSSNGTSENC

Best Arabidopsis Sequence Match ( AT5G65120.1 )
(BLAST)

001: MTGDWCSLVV SKETRVALCD MTNLPSKRGL SAILGDLLLK SGDDSGKSLA AREGSGVKFS KRLCLVVDDL VKESTRTSDT NEASSSEDKI SYDCDSENLD
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT

Arabidopsis Description

At5g65120 [Source:UniProtKB/TrEMBL;Acc:B4F7Q0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.