Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18686 | Canola | cytosol | 81.58 | 84.07 |
| CDY14541 | Canola | nucleus | 57.57 | 57.0 |
| AT5G65120.1 | Thale cress | nucleus | 56.58 | 54.26 |
| CDY08819 | Canola | nucleus | 56.25 | 53.27 |
| CDX81159 | Canola | nucleus | 39.14 | 41.75 |
| CDX78368 | Canola | nucleus | 37.83 | 40.78 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 12.17 | 35.24 |
| KRH43214 | Soybean | nucleus | 27.3 | 27.67 |
| Zm00001d052230_P001 | Maize | nucleus | 29.28 | 26.89 |
| KRH59375 | Soybean | nucleus | 24.67 | 26.22 |
| Os02t0752300-01 | Rice | nucleus | 28.29 | 26.14 |
| VIT_00s1188g00010.t01 | Wine grape | cytosol | 30.59 | 25.34 |
| OQU85411 | Sorghum | nucleus | 26.97 | 24.7 |
| TraesCS6B01G331200.2 | Wheat | cytosol, mitochondrion, nucleus | 24.67 | 23.36 |
| TraesCS6D01G281500.1 | Wheat | cytosol, nucleus, plastid | 24.34 | 23.05 |
| TraesCS6A01G302100.1 | Wheat | cytosol | 23.68 | 20.93 |
| PGSC0003DMT400053153 | Potato | nucleus | 24.34 | 20.56 |
| Solyc04g054900.2.1 | Tomato | nucleus | 24.01 | 20.33 |
| HORVU0Hr1G017100.2 | Barley | cytosol | 24.01 | 20.22 |
| VIT_00s0662g00020.t01 | Wine grape | cytosol, nucleus | 18.42 | 14.58 |
Protein Annotations
| EnsemblPlants:CDX81268 | EnsemblPlantsGene:GSBRNA2T00134773001 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF2 | ProteinID:CDX81268 | ProteinID:CDX81268.1 |
| SEG:seg | UniParc:UPI0004EE2212 | MapMan:35.2 | : | : | : |
Description
BnaC09g06790D
Coordinates
chrLK031824:+:570717..572523
Molecular Weight (calculated)
33423.8 Da
IEP (calculated)
4.257
GRAVY (calculated)
-0.558
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGDSCSLVS KETRLPLCDM TIVPSKRGLS SLLSDFLLKS GDDSGKTFAR EGSGVKFSKR LCLVVDDLVK ESTRSTDTND DSSSDGDKIS FGSSLVVDAD
101: SENLKESQGE TNAVDDIGVG DDAVVELSQR ECDNKDSNVA DFASQTDAVT GENLKETLYS RSNRESGDML ATEGTVLLPV DSMEIVNHDM EADDELRSCS
201: CSFCLKAAYI WSDLNYQDIK GRLSVLKKSQ KETSSLIQRN SKEEPTGVEF DVMGQWTSLF LNMNDILARE GSRLQDDFVA MKELRENCKI DLERATKPPQ
301: HNNS
101: SENLKESQGE TNAVDDIGVG DDAVVELSQR ECDNKDSNVA DFASQTDAVT GENLKETLYS RSNRESGDML ATEGTVLLPV DSMEIVNHDM EADDELRSCS
201: CSFCLKAAYI WSDLNYQDIK GRLSVLKKSQ KETSSLIQRN SKEEPTGVEF DVMGQWTSLF LNMNDILARE GSRLQDDFVA MKELRENCKI DLERATKPPQ
301: HNNS
001: MTGDWCSLVV SKETRVALCD MTNLPSKRGL SAILGDLLLK SGDDSGKSLA AREGSGVKFS KRLCLVVDDL VKESTRTSDT NEASSSEDKI SYDCDSENLD
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT
Arabidopsis Description
At5g65120 [Source:UniProtKB/TrEMBL;Acc:B4F7Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.