Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G095400.1 | |
| TraesCS6B01G123400.1 | |
| TraesCS6D01G088000.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10110.1 | TraesCS6A01G095400.1 | AT2G40630.1 | 21798944 |
| AT5G10110.1 | TraesCS6B01G123400.1 | AT2G40630.1 | 21798944 |
| AT5G10110.1 | TraesCS6D01G088000.1 | AT2G40630.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G331200.2 | Wheat | cytosol, mitochondrion, nucleus | 95.64 | 95.64 |
| TraesCS6A01G302100.1 | Wheat | cytosol | 91.9 | 85.76 |
| HORVU0Hr1G017100.2 | Barley | cytosol | 87.54 | 77.84 |
| Os02t0752300-01 | Rice | nucleus | 63.86 | 62.31 |
| OQU85411 | Sorghum | nucleus | 57.32 | 55.42 |
| Zm00001d052230_P001 | Maize | nucleus | 56.39 | 54.68 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 16.82 | 51.43 |
| Bra024356.1-P | Field mustard | cytosol | 15.58 | 36.5 |
| Bra006048.1-P | Field mustard | cytosol | 16.2 | 36.11 |
| CDX78368 | Canola | nucleus | 26.17 | 29.79 |
| CDX81159 | Canola | nucleus | 25.86 | 29.12 |
| Bra037805.1-P | Field mustard | cytosol | 24.3 | 26.44 |
| CDY18686 | Canola | cytosol | 23.99 | 26.1 |
| CDY14541 | Canola | nucleus | 24.61 | 25.73 |
| CDY08819 | Canola | nucleus | 25.55 | 25.55 |
| KRH59375 | Soybean | nucleus | 22.12 | 24.83 |
| CDX81268 | Canola | nucleus | 23.05 | 24.34 |
| AT5G65120.1 | Thale cress | nucleus | 23.99 | 24.29 |
| AT5G10110.1 | Thale cress | nucleus | 23.99 | 23.99 |
| KRH43214 | Soybean | nucleus | 22.12 | 23.67 |
| VIT_00s1188g00010.t01 | Wine grape | cytosol | 26.48 | 23.16 |
| PGSC0003DMT400053153 | Potato | nucleus | 25.55 | 22.78 |
| Solyc04g054900.2.1 | Tomato | nucleus | 25.23 | 22.56 |
| VIT_00s0662g00020.t01 | Wine grape | cytosol, nucleus | 16.82 | 14.06 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G281500.1 | EnsemblPlantsGene:TraesCS6D01G281500 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF2 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr6D:+:389298298..389304169
Molecular Weight (calculated)
35106.0 Da
IEP (calculated)
5.540
GRAVY (calculated)
-0.667
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MSENTQGSVR RAFGDLTNVL GKRPASCDLE KNAGGVKMSR VEKVVDPRKE SDEKAKANAG ASGNLVEVLV DGIGKEDFAR TSIFRGAKVQ HMAAQAAGLR
101: SKDDDDVRNR CVSLDSSGIN DKAESSLESE GGCEAEDDED TDSELLPYAS EASKIVINDK TNEGECLTQE EMVVSPGNQN PQSSFDATAR DDMTCTNVQH
201: PPMGVGGFEK SCATKSCTCT FCLKAAFMWT DLHYQDARSR LGALKKSIKF ARSLEAKRQG NEFNADRYSK RAAEMGFELS QQQRSLFLHT ENALVRESAQ
301: LHSAVVKLKD LRDNCKKDLK I
101: SKDDDDVRNR CVSLDSSGIN DKAESSLESE GGCEAEDDED TDSELLPYAS EASKIVINDK TNEGECLTQE EMVVSPGNQN PQSSFDATAR DDMTCTNVQH
201: PPMGVGGFEK SCATKSCTCT FCLKAAFMWT DLHYQDARSR LGALKKSIKF ARSLEAKRQG NEFNADRYSK RAAEMGFELS QQQRSLFLHT ENALVRESAQ
301: LHSAVVKLKD LRDNCKKDLK I
001: MTGDWCSLVV SKETRVALCD MTNLPSKRGL SAILGDLLLK SGDDSGKSLA AREGSGVKFS KRLCLVVDDL VKESTRTSDT NEASSSEDKI SYDCDSENLD
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSVLKK SQKEASGLIQ RNDRGTPTDI YGSENSNNST NTDNPMEQWT SLFRNMEGIL ARESNHLHNS FVAMKELREN
301: CKIDLERATK TSQQNNT
Arabidopsis Description
At5g65120 [Source:UniProtKB/TrEMBL;Acc:B4F7Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.