Factsheet for HORVU0Hr1G017100.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G017100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10110.1	HORVU6Hr1G017100.1	AT2G40630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G302100.1	Wheat	cytosol	86.98	91.28
TraesCS6B01G331200.2	Wheat	cytosol, mitochondrion, nucleus	78.12	87.85
TraesCS6D01G281500.1	Wheat	cytosol, nucleus, plastid	77.84	87.54
Os02t0752300-01	Rice	nucleus	54.85	60.18
OQU85411	Sorghum	nucleus	50.42	54.82
Zm00001d052230_P001	Maize	nucleus	48.75	53.17
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	13.02	44.76
Bra024356.1-P	Field mustard	cytosol	13.57	35.77
Bra006048.1-P	Field mustard	cytosol	14.13	35.42
CDX78368	Canola	nucleus	23.27	29.79
CDX81159	Canola	nucleus	22.71	28.77
Bra037805.1-P	Field mustard	cytosol	21.33	26.1
CDY18686	Canola	cytosol	21.05	25.76
KRH59375	Soybean	nucleus	19.94	25.17
CDY14541	Canola	nucleus	21.33	25.08
CDY08819	Canola	nucleus	22.16	24.92
CDX81268	Canola	nucleus	20.22	24.01
AT5G65120.1	Thale cress	nucleus	20.78	23.66
KRH43214	Soybean	nucleus	19.39	23.33
AT5G10110.1	Thale cress	nucleus	20.5	23.05
VIT_00s1188g00010.t01	Wine grape	cytosol	22.99	22.62
Solyc04g054900.2.1	Tomato	nucleus	21.33	21.45
PGSC0003DMT400053153	Potato	nucleus	21.33	21.39
VIT_00s0662g00020.t01	Wine grape	cytosol, nucleus	15.79	14.84

Protein Annotations

EnsemblPlants:HORVU0Hr1G017100.2	EnsemblPlantsGene:HORVU0Hr1G017100	PANTHER:PTHR33924	PANTHER:PTHR33924:SF2	UniParc:UPI000294B091	UniProt:M0WAZ7
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:+:91507636..91509818

Molecular Weight (calculated)

38939.9 Da

IEP (calculated)

5.158

GRAVY (calculated)

-0.339

Length

361 amino acids

Sequence
(BLAST)

001: MTENTQGSGR RAFGDLTNVL GKRPASCDLE KSAGGVKISR VEKVVDPRKE PHEKAKANVG ASGNLIEVLV DGIGKEDFAR TSIFRGAKVQ HMAAQAAGLL
101: SKDDDDVRNR SLSLDSSGLN DKAESSLESE GGCAGEDDDD TDSELLPFAS EASKIVINDK NNEGECLTQE EMVVSPGNQN PESSFDAAAR DDMTCTNVQH
201: PPMGVGDLEK SCATKSCTCS FCLKAAFMWT DLHYQDARSR LGALKKSIKF ARSLEAKRQG NEFSADRYSQ RAAQMGFELS QQQRSLFLHT ENALVRESAQ
301: LVSCFTPTIF HLSQNYVDGI LASICMVSLR LVAKSCGCQQ FTLGANVCLL ALVNFGGPLV C

Best Arabidopsis Sequence Match ( AT5G10110.1 )
(BLAST)

001: MTEDSSKSVS EQTRPVLSDL TNLPKKRGIS SILGDLLDES GKTVAHEVSK EKFSKRLCLV VDDLVKENAT PLDTIQGSCS FDKNTSGDAV DKEEYHDAVM
101: EFSSGDCKAL KESKSIQIYF EPGDRDGARE LNAAANADQT DVTGGEGLAL SLLTSDTESR NLLKTGKELS DCQNLRSFEM SRCSNVKNKE HVNLNTGDDL
201: LRSCCCSFCL TASYIWSDLN YQDSKGRLSA MKKSQKAASN LIQGNVKERS TDFHATGNSV SAKQESKLMA QWRSLFLSMG DILSEESSHL QNSFVRMKKL
301: RDDCKMDLER AMKKPQQHNT Q

Arabidopsis Description

DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q8VZV8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.