Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G095400.1 | |
| TraesCS6B01G123400.1 | |
| TraesCS6D01G088000.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10110.1 | TraesCS6A01G095400.1 | AT2G40630.1 | 21798944 |
| AT5G10110.1 | TraesCS6B01G123400.1 | AT2G40630.1 | 21798944 |
| AT5G10110.1 | TraesCS6D01G088000.1 | AT2G40630.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G281500.1 | Wheat | cytosol, nucleus, plastid | 85.76 | 91.9 |
| TraesCS6B01G331200.2 | Wheat | cytosol, mitochondrion, nucleus | 85.47 | 91.59 |
| HORVU0Hr1G017100.2 | Barley | cytosol | 91.28 | 86.98 |
| Os02t0752300-01 | Rice | nucleus | 58.72 | 61.4 |
| OQU85411 | Sorghum | nucleus | 53.2 | 55.12 |
| Zm00001d052230_P001 | Maize | nucleus | 51.74 | 53.78 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 14.53 | 47.62 |
| Bra024356.1-P | Field mustard | cytosol | 13.95 | 35.04 |
| Bra006048.1-P | Field mustard | cytosol | 14.53 | 34.72 |
| CDX78368 | Canola | nucleus | 24.13 | 29.43 |
| CDX81159 | Canola | nucleus | 23.55 | 28.42 |
| Bra037805.1-P | Field mustard | cytosol | 22.09 | 25.76 |
| KRH59375 | Soybean | nucleus | 21.22 | 25.52 |
| CDY18686 | Canola | cytosol | 21.8 | 25.42 |
| CDY14541 | Canola | nucleus | 22.38 | 25.08 |
| CDY08819 | Canola | nucleus | 23.26 | 24.92 |
| KRH43214 | Soybean | nucleus | 20.93 | 24.0 |
| CDX81268 | Canola | nucleus | 20.93 | 23.68 |
| AT5G65120.1 | Thale cress | nucleus | 21.51 | 23.34 |
| VIT_00s1188g00010.t01 | Wine grape | cytosol | 24.42 | 22.89 |
| AT5G10110.1 | Thale cress | nucleus | 21.22 | 22.74 |
| Solyc04g054900.2.1 | Tomato | nucleus | 21.51 | 20.61 |
| PGSC0003DMT400053153 | Potato | nucleus | 21.51 | 20.56 |
| VIT_00s0662g00020.t01 | Wine grape | cytosol, nucleus | 15.99 | 14.32 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G302100.1 | EnsemblPlantsGene:TraesCS6A01G302100 | PANTHER:PTHR33924 | PANTHER:PTHR33924:SF2 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr6A:+:535816807..535818062
Molecular Weight (calculated)
37379.9 Da
IEP (calculated)
4.958
GRAVY (calculated)
-0.418
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MTENTQGSGR RAFGDLTNVL GKRPASCDLE KNAGGVKMSR VEKVVNPRKE SDEKAKANVG ASGNLIEVLV DGIGKEDFAR TSIFRGAKVQ HMAAQAAGLL
101: SKDDDDVRNR CVSLDSSGLN DKAESSLESE GGCEGEDDED TDSELLPYAS EASKIVINDK TNEGECLTQE EMVVSPGNQN PQSSFDATAR DDMACTNVQH
201: PPMGVGGLEK SCATKSCTCS FCLKAAFMWT DLHYQDARSR LGALKKSIKF ARSLEAKRQG NEFNADRYSK RAAEMGFELS QQQRSLFLHT ENALVRESAQ
301: LVSCFIPTIF QLSQNYVDGV LVSICMVSLW LVAKSCDCHS LLSV
101: SKDDDDVRNR CVSLDSSGLN DKAESSLESE GGCEGEDDED TDSELLPYAS EASKIVINDK TNEGECLTQE EMVVSPGNQN PQSSFDATAR DDMACTNVQH
201: PPMGVGGLEK SCATKSCTCS FCLKAAFMWT DLHYQDARSR LGALKKSIKF ARSLEAKRQG NEFNADRYSK RAAEMGFELS QQQRSLFLHT ENALVRESAQ
301: LVSCFIPTIF QLSQNYVDGV LVSICMVSLW LVAKSCDCHS LLSV
001: MTGDWCSLVV SKETRVALCD MTNLPSKRGL SAILGDLLLK SGDDSGKSLA AREGSGVKFS KRLCLVVDDL VKESTRTSDT NEASSSEDKI SYDCDSENLD
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSGKCS YYTAKHRVE
101: VKESQGETNA GDIDVEPSKD DTVKETCEKD SNMNVCGSQT DAVTSEDLAM TLFSSNNNES EGLLVPNPQA IKSFNMNRCS NVDGMGIVNH HMEADGELKS
201: CSCSFCLTAA YIWSDLHYQD IKGRLSGKCS YYTAKHRVE
Arabidopsis Description
At5g65120 [Source:UniProtKB/TrEMBL;Acc:B4F7Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.