Factsheet for Bra040770.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61824	Canola	cytosol	100.0	100.0
CDY54677	Canola	cytosol	99.4	99.4
AT1G32250.1	Thale cress	cytosol	93.37	93.37
Solyc03g097100.1.1	Tomato	cytosol	69.28	70.55
Bra021379.1-P	Field mustard	cytosol	65.06	63.91
TraesCS1B01G208700.1	Wheat	cytosol	70.48	61.26
TraesCS1A01G193700.1	Wheat	cytosol	70.48	60.62
TraesCS1D01G197600.1	Wheat	cytosol	70.48	60.31
Os01t0505600-01	Rice	cytosol	69.88	54.98
HORVU1Hr1G080000.3	Barley	cytosol	61.45	54.55
OQU84270	Sorghum	cytosol, plastid	71.08	53.88
Bra017355.1-P	Field mustard	cytosol	47.59	49.07
Bra025149.1-P	Field mustard	cytosol	46.99	48.15
Bra025896.1-P	Field mustard	cytosol	44.58	47.13
Bra000214.1-P	Field mustard	cytosol	39.76	44.3
Bra003251.1-P	Field mustard	cytosol	39.76	44.3
Bra014671.1-P	Field mustard	cytosol	39.76	44.3
Bra034981.1-P	Field mustard	cytosol	38.55	44.14
Bra020155.1-P	Field mustard	cytosol	39.16	43.62
Bra002368.1-P	Field mustard	cytosol	39.16	43.62
Bra004166.1-P	Field mustard	cytosol	39.16	43.62
Bra006595.1-P	Field mustard	cytosol	39.16	43.62
Bra007269.1-P	Field mustard	cytosol	39.16	43.62
Bra019453.1-P	Field mustard	cytosol	38.55	42.95
Bra012037.1-P	Field mustard	cytosol	38.55	42.95
Bra025438.1-P	Field mustard	cytosol	28.92	42.48
HORVU1Hr1G050720.2	Barley	cytosol	64.46	41.0
Bra001892.1-P	Field mustard	cytosol	36.14	38.96
Bra039723.1-P	Field mustard	cytosol	35.54	38.56
Bra023786.1-P	Field mustard	cytosol	35.54	37.82
Bra033898.1-P	Field mustard	cytosol	34.94	37.42
Bra034317.1-P	Field mustard	cytosol	39.76	36.87
Bra026976.1-P	Field mustard	cytosol	26.51	29.73
Bra019756.1-P	Field mustard	cytosol	24.7	27.7

Protein Annotations

EnsemblPlants:Bra040770.1	EnsemblPlants:Bra040770.1-P	EnsemblPlantsGene:Bra040770	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR44256
PANTHER:PTHR44256:SF2	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI000253E880	UniProt:M4FI41	MapMan:35.1	:	:

Description

AT1G32250 (E=7e-078) | calmodulin, putative

Coordinates

chrScaffold000254:-:27143..27643

Molecular Weight (calculated)

18654.0 Da

IEP (calculated)

4.542

GRAVY (calculated)

-0.436

Length

166 amino acids

Sequence
(BLAST)

001: MSHKVSKKLD EEQINELREI FRSFDRNKDG SLTQLELGSL LRALGLKPSP DQFETLIDKA DTKSNGLVEF PEFVSLVSPE LLTEEKTRTP YTEEQLLRLF
101: RIFDTDGNGF ITAKELAHSM ARLGHALTVA ELTGMIKEAD SDGDGRINFQ EFSKAINSAA FDDLWG

Best Arabidopsis Sequence Match ( AT1G32250.1 )
(BLAST)

001: MSHKVSKKLD EEQINELREI FRSFDRNKDG SLTQLELGSL LRALGVKPSP DQFETLIDKA DTKSNGLVEF PEFVALVSPE LLSPAKRTTP YTEEQLLRLF
101: RIFDTDGNGF ITAAELAHSM AKLGHALTVA ELTGMIKEAD SDGDGRINFQ EFAKAINSAA FDDIWG

Arabidopsis Description

CML17Probable calcium-binding protein CML17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQN4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.