Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400083971 | Potato | extracellular | 100.0 | 100.0 |
| VIT_17s0000g00580.t01 | Wine grape | cytosol | 98.66 | 98.66 |
| Solyc01g008950.2.1 | Tomato | nucleus | 91.95 | 91.95 |
| Solyc10g081170.1.1 | Tomato | extracellular | 91.95 | 91.95 |
| Solyc10g077010.1.1 | Tomato | cytosol | 91.28 | 91.28 |
| Solyc11g072240.1.1 | Tomato | cytosol | 91.28 | 91.28 |
| Solyc12g099990.1.1 | Tomato | nucleus | 91.28 | 91.28 |
| Solyc06g053930.2.1 | Tomato | cytosol | 75.84 | 75.84 |
| EER90981 | Sorghum | cytosol | 71.81 | 71.81 |
| Solyc03g005240.1.1 | Tomato | cytosol | 69.13 | 67.32 |
| Solyc01g105630.2.1 | Tomato | cytosol | 61.74 | 62.59 |
| Solyc03g083520.2.1 | Tomato | cytosol, nucleus | 47.65 | 47.33 |
| Solyc11g072270.1.1 | Tomato | cytosol | 46.31 | 44.23 |
| Solyc03g097100.1.1 | Tomato | cytosol | 47.65 | 43.56 |
| Solyc02g090810.2.1 | Tomato | cytosol, mitochondrion | 46.98 | 41.67 |
| Solyc04g026350.2.1 | Tomato | cytosol | 47.65 | 41.04 |
| Solyc01g010020.2.1 | Tomato | cytosol | 35.57 | 32.92 |
| Solyc03g114420.1.1 | Tomato | cytosol | 34.23 | 29.82 |
Protein Annotations
| EMBL:M67472 | EnsemblPlants:Solyc03g098050.2.1 | EnsemblPlantsGene:Solyc03g098050.2 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | GO:GO:0046872 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 |
| PANTHER:PTHR23050 | PANTHER:PTHR23050:SF319 | PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI0000000326 | UniProt:P27161 | MapMan:35.1 | : | : |
Description
CALM1Calmodulin [Source:UniProtKB/Swiss-Prot;Acc:P27161]
Coordinates
chr3:+:60397906..60400732
Molecular Weight (calculated)
16932.8 Da
IEP (calculated)
3.892
GRAVY (calculated)
-0.607
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQLTEEQI AEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMISEVDADQ NGTIDFPEFL NLMARKMKDT DSEEELKEAF KVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD IDGDGQVNYE EFVRMMLAK
101: ISAAELRHVM TNLGEKLTDE EVDEMIREAD IDGDGQVNYE EFVRMMLAK
001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
Arabidopsis Description
CAM5Calmodulin 5 [Source:UniProtKB/TrEMBL;Acc:F4IVN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.