CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g055670.1.1	Tomato	cytosol	22.65	66.13
CDY29667	Canola	cytosol	27.07	42.24
PGSC0003DMT400096244	Potato	mitochondrion	48.62	36.97
Solyc10g074800.1.1	Tomato	nucleus, plastid	60.77	33.74
CDY63845	Canola	nucleus	65.19	33.71
CDX90224	Canola	nucleus	65.75	33.71
PGSC0003DMT400071236	Potato	nucleus, plastid	60.22	33.03
CDY11166	Canola	cytosol	27.07	31.01
AT1G30050.1	Thale cress	nucleus	65.75	30.59
CDX99879	Canola	mitochondrion	65.75	30.05
CDY26298	Canola	nucleus	65.75	29.82
PGSC0003DMT400071259	Potato	extracellular, golgi	31.49	29.38
CDY23991	Canola	plastid	48.62	27.41
CDX84826	Canola	plastid	49.17	26.33
KRH09568	Soybean	nucleus	55.25	26.11
Zm00001d010455_P013	Maize	plastid	53.59	25.94
KRH64858	Soybean	nucleus	54.7	25.92
VIT_08s0056g00430.t01	Wine grape	nucleus	58.01	24.59
KRH40636	Soybean	nucleus	56.35	24.46
KRH00520	Soybean	nucleus	55.8	23.82
Os05t0315200-01	Rice	plasma membrane	54.14	23.39
GSMUA_Achr3P09690_001	Banana	mitochondrion	54.14	23.17
TraesCS1A01G128300.1	Wheat	cytosol, plastid	53.59	22.4
TraesCS1D01G124900.2	Wheat	nucleus	53.59	22.4
TraesCS1B01G146700.2	Wheat	mitochondrion	53.59	21.13
CDY11165	Canola	cytosol	2.21	21.05
GSMUA_Achr8P21430_001	Banana	mitochondrion	51.38	20.39
CDX90923	Canola	nucleus, plastid	32.04	17.74
CDY17988	Canola	nucleus	32.6	17.51
OQU77734	Sorghum	nucleus, plastid	25.41	15.7

Protein Annotations

EnsemblPlants:CDX98180	EnsemblPlantsGene:GSBRNA2T00105609001	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6	ProteinID:CDX98180
ProteinID:CDX98180.1	SEG:seg	UniParc:UPI0004EEDB9E	MapMan:20.2.4.4	:	:

Description

BnaC07g09180D

Coordinates

chrLK031903:+:405863..406949

Molecular Weight (calculated)

20534.7 Da

IEP (calculated)

5.446

GRAVY (calculated)

-0.384

Length

181 amino acids

Sequence
(BLAST)

001: MATINATKPR RVSIKASRDV AMATAAKAKL LLRELKTVKA DLAFAKQRCS QLEEENKRLR DNREKGSNNP ADDDLIRLQL DTLLAEKARL ADENSIYARE
101: LRENRFLREI VEYHQLPMQD VVYIDEGIEE VAEVNPSITR TLSLTSFAAS NLLVIRILDK ELLCPLKECD VVIQHATEES S

Best Arabidopsis Sequence Match ( AT1G30050.1 )
(BLAST)

001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV

Arabidopsis Description

Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.