Factsheet for PGSC0003DMT400071259

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01970.1	PGSC0003DMT400038352	AT3G03000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98180	Canola	mitochondrion	29.38	31.49
PGSC0003DMT400071236	Potato	nucleus, plastid	52.06	30.61
Solyc10g074800.1.1	Tomato	nucleus, plastid	50.52	30.06
CDY11166	Canola	cytosol	22.16	27.22
OQU77734	Sorghum	nucleus, plastid	40.72	26.96
PGSC0003DMT400096244	Potato	mitochondrion	31.96	26.05
Bra005657.1-P	Field mustard	mitochondrion	20.62	25.48
AT5G01970.1	Thale cress	mitochondrion, nucleus	41.24	22.79
Zm00001d010455_P013	Maize	plastid	42.78	22.19
CDX90224	Canola	nucleus	38.66	21.25
CDY63845	Canola	nucleus	38.14	21.14
Bra010801.1-P	Field mustard	nucleus	39.69	20.53
Bra032355.1-P	Field mustard	nucleus	40.21	19.65
CDY26298	Canola	nucleus	40.21	19.55
CDX99879	Canola	mitochondrion	39.69	19.44
AT1G30050.1	Thale cress	nucleus	38.66	19.28
Os05t0315200-01	Rice	plasma membrane	40.21	18.62
VIT_08s0056g00430.t01	Wine grape	nucleus	40.72	18.5
KRH40636	Soybean	nucleus	39.69	18.47
GSMUA_Achr3P09690_001	Banana	mitochondrion	39.69	18.2
TraesCS1D01G124900.2	Wheat	nucleus	40.21	18.01
KRH00520	Soybean	nucleus	39.18	17.92
TraesCS1A01G128300.1	Wheat	cytosol, plastid	39.69	17.78
KRH64858	Soybean	nucleus	34.54	17.54
TraesCS1B01G146700.2	Wheat	mitochondrion	40.72	17.21
KRH09568	Soybean	nucleus	33.51	16.97
GSMUA_Achr8P21430_001	Banana	mitochondrion	38.14	16.23
CDY11165	Canola	cytosol	1.55	15.79
PGSC0003DMT400037917	Potato	nucleus	20.62	12.01

Protein Annotations

EnsemblPlants:PGSC0003DMT400071259	EnsemblPlantsGene:PGSC0003DMG400027708	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6	PGSC:PGSC0003DMG400027708
SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000296C028	UniProt:M1CNF6	MapMan:20.2.4.4	:

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027708]

Coordinates

chr10:-:48600892..48602337

Molecular Weight (calculated)

21881.4 Da

IEP (calculated)

9.116

GRAVY (calculated)

-0.378

Length

194 amino acids

Sequence
(BLAST)

001: MEVKQRAFLK QQVLVKLLLL LQILHPNTQH LALLVDGTQQ SPLRLDSHER ILNSRVLDEP SLLTVSRVVA VSEILHQTGK EGRTIVETSQ DHISNGRNPW
101: QMQTTRPQTQ TIHEDQLKAS RDVAMATAAK AKLLLRELKT VKADLAFAKQ RSSQLEEENK MLREAREKGD NPADDDMVVL FSLTTTNFVL ISSS

Best Arabidopsis Sequence Match ( AT1G30050.1 )
(BLAST)

001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV

Arabidopsis Description

Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.