Factsheet for Bra005657.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021379.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01970.1	Bra021379.1-P	AT3G03000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11166	Canola	cytosol	63.69	63.29
Solyc09g055670.1.1	Tomato	cytosol	19.75	50.0
PGSC0003DMT400096244	Potato	mitochondrion	42.68	28.15
AT5G01970.1	Thale cress	mitochondrion, nucleus	55.41	24.79
Solyc10g074800.1.1	Tomato	nucleus, plastid	47.77	23.01
PGSC0003DMT400071236	Potato	nucleus, plastid	47.77	22.73
Zm00001d010455_P013	Maize	plastid	50.96	21.39
Bra021640.1-P	Field mustard	nucleus	28.03	21.15
PGSC0003DMT400071259	Potato	extracellular, golgi	25.48	20.62
Bra010801.1-P	Field mustard	nucleus	48.41	20.27
Bra022806.1-P	Field mustard	plastid	43.31	20.24
KRH09568	Soybean	nucleus	47.13	19.32
KRH40636	Soybean	nucleus	50.96	19.18
Bra032355.1-P	Field mustard	nucleus	47.77	18.89
Os05t0315200-01	Rice	plasma membrane	50.32	18.85
KRH64858	Soybean	nucleus	45.86	18.85
VIT_08s0056g00430.t01	Wine grape	nucleus	50.96	18.74
KRH00520	Soybean	nucleus	49.68	18.4
TraesCS1D01G124900.2	Wheat	nucleus	48.41	17.55
GSMUA_Achr3P09690_001	Banana	mitochondrion	47.13	17.49
TraesCS1A01G128300.1	Wheat	cytosol, plastid	47.77	17.32
TraesCS1B01G146700.2	Wheat	mitochondrion	48.41	16.56
GSMUA_Achr8P21430_001	Banana	mitochondrion	47.77	16.45
Bra000862.1-P	Field mustard	nucleus, plastid	31.85	15.24
OQU77734	Sorghum	nucleus, plastid	26.75	14.33

Protein Annotations

EnsemblPlants:Bra005657.1	EnsemblPlants:Bra005657.1-P	EnsemblPlantsGene:Bra005657	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6
SEG:seg	UniParc:UPI000253F9B7	UniProt:M4CN69	MapMan:20.2.4.4	:	:

Description

AT5G01970 (E=3e-025) | unknown protein

Coordinates

chrA03:-:19631..20920

Molecular Weight (calculated)

17923.5 Da

IEP (calculated)

10.391

GRAVY (calculated)

-0.732

Length

157 amino acids

Sequence
(BLAST)

001: MLCKFSGRER RRHGIGKFAT LKDDTDRLPP SRKASLPAAL AFPDFDHPRS KVARATAAKA KLLLHELKNV KADLAFVKER RAQLEEDNIH LRENHHGKGS
101: NPAIRLQLES LLAEKARLAH ESSVYQRENR IIKYHQLTMQ DEGSDEVTHK STLLYPL

Best Arabidopsis Sequence Match ( AT5G01970.1 )
(BLAST)

001: MAYRRRQGIG KFATFKEEVD RLPPESITAV KDRSPPARSS PAFDQPRSKN FTTEPKGLWG VIAQKAKSVI EDDKSSDRST TASQSRFSYL SDEGFKKMDN
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S

Arabidopsis Description

Heat-inducible transcription repressor [Source:UniProtKB/TrEMBL;Acc:Q9LZN4]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.