Factsheet for Bra022806.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005657.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30530.1	Bra005657.1-P	AT5G01970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84826	Canola	plastid	97.92	97.34
Bra021640.1-P	Field mustard	nucleus	42.26	68.27
AT2G30530.1	Thale cress	nucleus	72.32	65.5
Solyc09g055590.2.1	Tomato	nucleus	31.55	55.79
VIT_06s0004g08310.t01	Wine grape	mitochondrion	55.95	44.76
Zm00001d010455_P013	Maize	plastid	49.11	44.12
KRH30689	Soybean	nucleus	55.06	43.43
Bra005657.1-P	Field mustard	mitochondrion	20.24	43.31
KRG98088	Soybean	nucleus	54.17	41.46
Os05t0315200-01	Rice	plasma membrane	50.89	40.81
OQU77734	Sorghum	nucleus, plastid	34.82	39.93
TraesCS1D01G124900.2	Wheat	nucleus	49.7	38.57
GSMUA_Achr8P21430_001	Banana	mitochondrion	52.08	38.38
TraesCS1A01G128300.1	Wheat	cytosol, plastid	49.4	38.34
GSMUA_Achr3P09690_001	Banana	mitochondrion	47.32	37.59
Bra010801.1-P	Field mustard	nucleus	41.67	37.33
Bra032355.1-P	Field mustard	nucleus	43.45	36.78
TraesCS1B01G146700.2	Wheat	mitochondrion	49.7	36.38
Bra000862.1-P	Field mustard	nucleus, plastid	23.51	24.09

Protein Annotations

EnsemblPlants:Bra022806.1	EnsemblPlants:Bra022806.1-P	EnsemblPlantsGene:Bra022806	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF3
SEG:seg	UniParc:UPI0002540242	UniProt:M4E206	MapMan:20.2.4.4	:	:

Description

AT2G30530 (E=4e-097) | unknown protein

Coordinates

chrA03:+:7160376..7161823

Molecular Weight (calculated)

36994.2 Da

IEP (calculated)

6.901

GRAVY (calculated)

-0.683

Length

336 amino acids

Sequence
(BLAST)

001: MERDKARMLS SSFPSSSSSS SSSSSAASSL AAKAIRASSA HRDSSLSSAY SSPPVPTPPK EVVRKPYEYT SMKSLNEPKR SFWGSLASKA KALLDDEDPP
101: PQSPTTTIDH HNTPSSTTAS SGTKEAGRKT ENPSLQRSLD AITSSFNYIG TAVEEGITAV ETRTAGIIQE TRKKIKKKPN PPEIQADLEI QLKASRDVAM
201: AMAAKAKLLL RELKMVKSDL AFAKQRCAQL EEENKVLRED HNGENSQTDN DDLVRLQLET LLAEKARLAH ENSIYTRENL YLRGVVEYHQ LTMQDVVYFD
301: EKTEEVTEVY PINVTSVSSS SNISNTHPNP QALEFK

Best Arabidopsis Sequence Match ( AT2G30530.1 )
(BLAST)

001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K

Arabidopsis Description

At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.