CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00520
KRH09568
KRH40636
KRH64858

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30530.1	KRH00520	AT5G01970.1	21798944
AT2G30530.1	KRH09568	AT5G01970.1	21798944
AT2G30530.1	KRH40636	AT5G01970.1	21798944
AT2G30530.1	KRH64858	AT5G01970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98088	Soybean	nucleus	86.85	84.28
Solyc09g055590.2.1	Tomato	nucleus	25.82	57.89
CDY23991	Canola	plastid	42.72	56.7
Bra022806.1-P	Field mustard	plastid	43.43	55.06
VIT_06s0004g08310.t01	Wine grape	mitochondrion	53.29	54.05
CDX84826	Canola	plastid	42.72	53.85
AT2G30530.1	Thale cress	nucleus	45.77	52.56
Zm00001d010455_P013	Maize	plastid	45.77	52.14
CDY29667	Canola	cytosol	13.85	50.86
Bra021640.1-P	Field mustard	nucleus	24.65	50.48
OQU77734	Sorghum	nucleus, plastid	33.1	48.12
Os05t0315200-01	Rice	plasma membrane	46.71	47.49
GSMUA_Achr3P09690_001	Banana	mitochondrion	45.07	45.39
GSMUA_Achr8P21430_001	Banana	mitochondrion	47.65	44.52
KRH40636	Soybean	nucleus	42.72	43.65
KRH64858	Soybean	nucleus	38.73	43.19
TraesCS1D01G124900.2	Wheat	nucleus	43.9	43.19
KRH09568	Soybean	nucleus	38.5	42.82
TraesCS1A01G128300.1	Wheat	cytosol, plastid	43.43	42.73
TraesCS1B01G146700.2	Wheat	mitochondrion	44.6	41.39
KRH00520	Soybean	nucleus	41.08	41.27
KRH67202	Soybean	nucleus, plastid	19.01	24.62
KRG95525	Soybean	nucleus, plastid	19.48	24.41

Protein Annotations

EMBL:ACUP02007059	EnsemblPlants:KRH30689	EnsemblPlantsGene:GLYMA_11G200700	EntrezGene:100776889	ncoils:Coil	PANTHER:PTHR31016
PANTHER:PTHR31016:SF3	ProteinID:KRH30687.1	ProteinID:KRH30688.1	ProteinID:KRH30689	ProteinID:KRH30689.1	SEG:seg
UniParc:UPI00023CC11B	UniProt:I1LLZ7	MapMan:20.2.4.4	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:28013694..28019971

Molecular Weight (calculated)

47232.1 Da

IEP (calculated)

7.040

GRAVY (calculated)

-0.824

Length

426 amino acids

Sequence
(BLAST)

001: MAYRRRQQQG FSKPSFSTFE EEAATRNPNN PFPPPNDDVE GSASSSSSSS LAAKAIRASS ARRDSSLSSL YGLSSASSSP VSPSQPTPTP PPSSKDSRPY
101: EYTSMKNMNE SKNGFWGVLA RKAKSIIEDD NIPQQSEMSE TGRSQFPGVA SRSKFQNSNH LEESNLKRDS PAFIKGLDAF TSSLTHIGGT IGKSLEEGLT
201: IVENRTSDII QETRKHIRKK PGNSVGQNQE TNHSTTVHQS QLRNQMSPKQ TDQELQLKAS RDVAMAMAAK AKLLLRELKT VKADLAFAKD RCAQLEEENK
301: ILRENRERGD SHDDDDLIRL QLESLLAEKA RLAHENSVYA RENRFLREVV EYHQLTMQDV VYFDESNEEV TEVNHLNLPP VPKMSLDSIT PSTTSLSLSP
401: EPNLGMASEL TRGISSTMPG KDAKMR

Best Arabidopsis Sequence Match ( AT2G30530.1 )
(BLAST)

001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K

Arabidopsis Description

At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.