CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU77734

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30530.1	OQU77734	AT5G01970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010455_P013	Maize	plastid	91.13	71.39
Os05t0315200-01	Rice	plasma membrane	73.04	51.07
TraesCS1D01G124900.2	Wheat	nucleus	67.92	45.96
TraesCS1A01G128300.1	Wheat	cytosol, plastid	66.55	45.03
TraesCS1B01G146700.2	Wheat	mitochondrion	67.58	43.14
PGSC0003DMT400071259	Potato	extracellular, golgi	26.96	40.72
GSMUA_Achr3P09690_001	Banana	mitochondrion	54.61	37.83
GSMUA_Achr8P21430_001	Banana	mitochondrion	56.31	36.18
PGSC0003DMT400096244	Potato	mitochondrion	28.67	35.29
CDY23991	Canola	plastid	38.57	35.2
CDX84826	Canola	plastid	40.27	34.91
Bra022806.1-P	Field mustard	plastid	39.93	34.82
AT2G30530.1	Thale cress	nucleus	44.03	34.77
VIT_06s0004g08310.t01	Wine grape	mitochondrion	49.83	34.76
VIT_08s0056g00430.t01	Wine grape	nucleus	49.49	33.96
KRH30689	Soybean	nucleus	48.12	33.1
AT5G01970.1	Thale cress	mitochondrion, nucleus	38.57	32.19
Solyc09g055590.2.1	Tomato	nucleus	20.82	32.11
CDY11166	Canola	cytosol	17.06	31.65
KRG98088	Soybean	nucleus	46.76	31.21
PGSC0003DMT400071236	Potato	nucleus, plastid	33.11	29.39
Solyc10g074800.1.1	Tomato	nucleus, plastid	32.08	28.83
EES16589	Sorghum	mitochondrion, nucleus	36.18	28.73
KRH40636	Soybean	nucleus	39.25	27.58
CDY63845	Canola	nucleus	32.08	26.86
Bra005657.1-P	Field mustard	mitochondrion	14.33	26.75
Bra032355.1-P	Field mustard	nucleus	36.18	26.7
AT1G30050.1	Thale cress	nucleus	35.15	26.48
KRH00520	Soybean	nucleus	38.23	26.42
Bra010801.1-P	Field mustard	nucleus	33.79	26.4
CDX90224	Canola	nucleus	31.74	26.35
CDY26298	Canola	nucleus	35.49	26.07
CDX99879	Canola	mitochondrion	34.81	25.76
CDX98180	Canola	mitochondrion	15.7	25.41
KRH64858	Soybean	nucleus	31.74	24.35
KRH09568	Soybean	nucleus	30.38	23.24
Bra021640.1-P	Field mustard	nucleus	16.38	23.08
EES19707	Sorghum	nucleus	33.45	17.53
EES11875	Sorghum	cytosol, nucleus, plastid	17.41	16.35
CDY11165	Canola	cytosol	1.02	15.79
CDY29667	Canola	cytosol	2.73	6.9
Solyc09g055670.1.1	Tomato	cytosol	0.34	1.61

Protein Annotations

EnsemblPlants:OQU77734	EnsemblPlantsGene:SORBI_3009G095100	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6	ProteinID:OQU77734
ProteinID:OQU77734.1	SEG:seg	UniParc:UPI000B8BAA94	UniProt:A0A1Z5R1S5	MapMan:20.2.4.4	:

Description

hypothetical protein

Coordinates

chr9:+:26576131..26578299

Molecular Weight (calculated)

32500.0 Da

IEP (calculated)

8.016

GRAVY (calculated)

-0.830

Length

293 amino acids

Sequence
(BLAST)

001: MACRRKPQPQ PQPTPSFEHH YPPFVGPASP DSLAKQAMRA SAAHRDASSL ASAYSSSASL ASSLRSHHEP SVSTQSPDCS GYEYTSMKSL NEAKYGFWGT
101: LARKAKSFLD EDCSPEQYKS PRDDVQVDVQ LPHSKQLSGE TWKPETPPSQ KRSESITSSL THIGGTIKNA LEEGRTIVEN KTADIIQETR KLNIRRKGAG
201: LNTQGEAGHK ILQRHLPQNP LDHETQLKAS RDVANAMAAK AKLLLRELKT LKADLAFAKE RCAQLEEENK MLRESYDKGD NPEDDDLVSI YFL

Best Arabidopsis Sequence Match ( AT2G30530.1 )
(BLAST)

001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K

Arabidopsis Description

At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.