CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032355.1-P	Field mustard	nucleus	96.49	96.98
CDX99879	Canola	mitochondrion	88.22	88.89
CDY63845	Canola	nucleus	65.66	74.86
AT1G30050.1	Thale cress	nucleus	72.43	74.29
CDX90224	Canola	nucleus	64.91	73.37
Solyc09g055670.1.1	Tomato	cytosol	11.03	70.97
CDX98180	Canola	mitochondrion	29.82	65.75
PGSC0003DMT400096244	Potato	mitochondrion	31.33	52.52
CDY29667	Canola	cytosol	14.79	50.86
Solyc10g074800.1.1	Tomato	nucleus, plastid	40.85	50.0
PGSC0003DMT400071236	Potato	nucleus, plastid	41.1	49.7
VIT_08s0056g00430.t01	Wine grape	nucleus	48.37	45.2
CDY23991	Canola	plastid	36.09	44.86
KRH40636	Soybean	nucleus	46.87	44.84
KRH00520	Soybean	nucleus	46.62	43.87
Zm00001d010455_P013	Maize	plastid	40.6	43.32
CDX84826	Canola	plastid	36.59	43.2
KRH64858	Soybean	nucleus	39.1	40.84
PGSC0003DMT400071259	Potato	extracellular, golgi	19.55	40.21
Os05t0315200-01	Rice	plasma membrane	41.85	39.86
KRH09568	Soybean	nucleus	37.09	38.64
CDY11166	Canola	cytosol	15.29	38.61
GSMUA_Achr3P09690_001	Banana	mitochondrion	39.6	37.35
TraesCS1D01G124900.2	Wheat	nucleus	39.6	36.49
TraesCS1A01G128300.1	Wheat	cytosol, plastid	38.85	35.8
GSMUA_Achr8P21430_001	Banana	mitochondrion	40.85	35.75
OQU77734	Sorghum	nucleus, plastid	26.07	35.49
TraesCS1B01G146700.2	Wheat	mitochondrion	39.85	34.64
CDY11165	Canola	cytosol	1.25	26.32
CDX90923	Canola	nucleus, plastid	19.8	24.16
CDY17988	Canola	nucleus	19.8	23.44

Protein Annotations

EnsemblPlants:CDY26298	EnsemblPlantsGene:GSBRNA2T00034989001	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6	ProteinID:CDY26298
ProteinID:CDY26298.1	SEG:seg	UniParc:UPI0004EE38BC	UniProt:A0A078GNS3	MapMan:20.2.4.4	:

Description

BnaA09g26490DBnaA09g26490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNS3]

Coordinates

chrLK032187:-:328616..329885

Molecular Weight (calculated)

44203.0 Da

IEP (calculated)

5.362

GRAVY (calculated)

-0.774

Length

399 amino acids

Sequence
(BLAST)

001: MAYRRRQGVT RASTFNDDIY HQTPDLDYGD LKGHSNGKSS FRSSQSFSSY SSLAAQAIRA SSSLNPNSNS EVRGFTAYED ANKNDSRGFW GILAQKAKSI
101: LEDEEEQEQQ NVVVSEPSSN NNSNPTIRKS IDKITTSLNQ IGDSFEKAFE EGRTMVASQI RRKGSDLMDI PENHNQSSGS NSPWQPLTQP NPHESQLKAS
201: RDVAMATAAK AKLLLRELKT VKADQAFAKQ RCSQLEEENK RLRDNREKGT NNPADDDLIR LQLETLLAEK ARLAHENSIY ARENRFLREI VEYHQLTMQD
301: VVYIDEGIEE VAEVNPSITR TLSMASFAAS EFPVNSSSPL SPSSPSRLSV STDVYPVLVQ QSSASDVGGG SADESPRPVR PPSLGYTDDV KRSLSQMSV

Best Arabidopsis Sequence Match ( AT1G30050.1 )
(BLAST)

001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV

Arabidopsis Description

Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.