Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G128300.1 | |
| TraesCS1B01G146700.2 | |
| TraesCS1D01G124900.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30530.1 | TraesCS1A01G128300.1 | AT5G01970.1 | 21798944 |
| AT2G30530.1 | TraesCS1B01G146700.2 | AT5G01970.1 | 21798944 |
| AT2G30530.1 | TraesCS1D01G124900.2 | AT5G01970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G124900.2 | Wheat | nucleus | 95.15 | 95.15 |
| TraesCS1B01G146700.2 | Wheat | mitochondrion | 93.07 | 87.8 |
| Os05t0315200-01 | Rice | plasma membrane | 73.21 | 75.66 |
| Solyc09g055670.1.1 | Tomato | cytosol | 10.16 | 70.97 |
| Zm00001d010455_P013 | Maize | plastid | 60.05 | 69.52 |
| OQU77734 | Sorghum | nucleus, plastid | 45.03 | 66.55 |
| Solyc09g055590.2.1 | Tomato | nucleus | 24.02 | 54.74 |
| CDX98180 | Canola | mitochondrion | 22.4 | 53.59 |
| PGSC0003DMT400096244 | Potato | mitochondrion | 29.1 | 52.94 |
| CDY23991 | Canola | plastid | 38.11 | 51.4 |
| GSMUA_Achr3P09690_001 | Banana | mitochondrion | 50.12 | 51.3 |
| AT2G30530.1 | Thale cress | nucleus | 42.49 | 49.6 |
| Bra022806.1-P | Field mustard | plastid | 38.34 | 49.4 |
| CDX84826 | Canola | plastid | 38.34 | 49.11 |
| GSMUA_Achr8P21430_001 | Banana | mitochondrion | 51.27 | 48.68 |
| VIT_06s0004g08310.t01 | Wine grape | mitochondrion | 47.11 | 48.57 |
| CDY29667 | Canola | cytosol | 12.93 | 48.28 |
| Bra005657.1-P | Field mustard | mitochondrion | 17.32 | 47.77 |
| AT5G01970.1 | Thale cress | mitochondrion, nucleus | 37.64 | 46.44 |
| VIT_08s0056g00430.t01 | Wine grape | nucleus | 45.27 | 45.9 |
| PGSC0003DMT400071236 | Potato | nucleus, plastid | 34.18 | 44.85 |
| Solyc10g074800.1.1 | Tomato | nucleus, plastid | 33.03 | 43.87 |
| KRH30689 | Soybean | nucleus | 42.73 | 43.43 |
| Bra021640.1-P | Field mustard | nucleus | 20.79 | 43.27 |
| CDX90224 | Canola | nucleus | 34.18 | 41.93 |
| KRG98088 | Soybean | nucleus | 41.8 | 41.23 |
| CDY63845 | Canola | nucleus | 33.26 | 41.14 |
| Bra010801.1-P | Field mustard | nucleus | 35.57 | 41.07 |
| AT1G30050.1 | Thale cress | nucleus | 36.49 | 40.62 |
| TraesCS4A01G192700.1 | Wheat | nucleus | 34.64 | 40.0 |
| PGSC0003DMT400071259 | Potato | extracellular, golgi | 17.78 | 39.69 |
| CDX99879 | Canola | mitochondrion | 36.26 | 39.65 |
| KRH40636 | Soybean | nucleus | 38.11 | 39.57 |
| Bra032355.1-P | Field mustard | nucleus | 36.03 | 39.29 |
| CDY26298 | Canola | nucleus | 35.8 | 38.85 |
| CDY11166 | Canola | cytosol | 13.86 | 37.97 |
| KRH00520 | Soybean | nucleus | 36.95 | 37.74 |
| CDY11165 | Canola | cytosol | 1.62 | 36.84 |
| KRH64858 | Soybean | nucleus | 31.64 | 35.86 |
| KRH09568 | Soybean | nucleus | 31.41 | 35.51 |
| TraesCS2A01G067400.1 | Wheat | cytosol | 17.78 | 23.91 |
| TraesCS1A01G303000.2 | Wheat | nucleus | 31.18 | 23.68 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G128300.1 | EnsemblPlantsGene:TraesCS1A01G128300 | ncoils:Coil | PANTHER:PTHR31016 | PANTHER:PTHR31016:SF6 | SEG:seg |
| MapMan:20.2.4.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:157312144..157316818
Molecular Weight (calculated)
47027.0 Da
IEP (calculated)
9.312
GRAVY (calculated)
-0.741
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MHHIATIKRA PLTPSETHRS AAATGMAYRR KPQSSFEHHH HPQPVSPPSP PQDSLAAQAM RASAAHRDAS SISSAYSSSA ASAAAAARRS HEPSVSTPSP
101: XXXXYGYTSM KSLNEAKYGF WGTLARKAKS LIDEDGSPGQ YDSPTRQQPP RDGTSPAIHR QHLQQPAPET WKSETPPSQK RSEALASSLN YIGGTIKSAL
201: EEGRIIVETK TADIIQETRK LNIRRKGAGS NPQGETSHKF AHRNFPQNPL DYETQLKASR DVANAMSAKA KLLLRELKTV KADLAFAKER CAQLEDENKM
301: LRENQDNGDN PEDDDLIRLQ LETLLAEKAR LAHENSVYAR ENRFLREIVE YHQLTMQDVI YVDEGIEEVT EVYPTQVLPP ASARNGSGLG RASTPVTLKH
401: INSSPASTSA LPEPCLIVPV SPKTLSRASS QSK
101: XXXXYGYTSM KSLNEAKYGF WGTLARKAKS LIDEDGSPGQ YDSPTRQQPP RDGTSPAIHR QHLQQPAPET WKSETPPSQK RSEALASSLN YIGGTIKSAL
201: EEGRIIVETK TADIIQETRK LNIRRKGAGS NPQGETSHKF AHRNFPQNPL DYETQLKASR DVANAMSAKA KLLLRELKTV KADLAFAKER CAQLEDENKM
301: LRENQDNGDN PEDDDLIRLQ LETLLAEKAR LAHENSVYAR ENRFLREIVE YHQLTMQDVI YVDEGIEEVT EVYPTQVLPP ASARNGSGLG RASTPVTLKH
401: INSSPASTSA LPEPCLIVPV SPKTLSRASS QSK
001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K
Arabidopsis Description
At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.