Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G128300.1 | |
| TraesCS1B01G146700.2 | |
| TraesCS1D01G124900.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30530.1 | TraesCS1A01G128300.1 | AT5G01970.1 | 21798944 |
| AT2G30530.1 | TraesCS1B01G146700.2 | AT5G01970.1 | 21798944 |
| AT2G30530.1 | TraesCS1D01G124900.2 | AT5G01970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G124900.2 | Wheat | nucleus | 89.11 | 94.46 |
| TraesCS1A01G128300.1 | Wheat | cytosol, plastid | 87.8 | 93.07 |
| Os05t0315200-01 | Rice | plasma membrane | 69.06 | 75.66 |
| Zm00001d010455_P013 | Maize | plastid | 57.95 | 71.12 |
| Solyc09g055670.1.1 | Tomato | cytosol | 9.59 | 70.97 |
| OQU77734 | Sorghum | nucleus, plastid | 43.14 | 67.58 |
| Solyc09g055590.2.1 | Tomato | nucleus | 22.88 | 55.26 |
| CDX98180 | Canola | mitochondrion | 21.13 | 53.59 |
| PGSC0003DMT400096244 | Potato | mitochondrion | 27.45 | 52.94 |
| GSMUA_Achr3P09690_001 | Banana | mitochondrion | 48.15 | 52.25 |
| CDY23991 | Canola | plastid | 36.38 | 52.02 |
| AT2G30530.1 | Thale cress | nucleus | 40.3 | 49.87 |
| Bra022806.1-P | Field mustard | plastid | 36.38 | 49.7 |
| VIT_06s0004g08310.t01 | Wine grape | mitochondrion | 45.32 | 49.52 |
| CDX84826 | Canola | plastid | 36.38 | 49.41 |
| GSMUA_Achr8P21430_001 | Banana | mitochondrion | 49.02 | 49.34 |
| CDY29667 | Canola | cytosol | 12.42 | 49.14 |
| Bra005657.1-P | Field mustard | mitochondrion | 16.56 | 48.41 |
| AT5G01970.1 | Thale cress | mitochondrion, nucleus | 35.73 | 46.72 |
| VIT_08s0056g00430.t01 | Wine grape | nucleus | 43.14 | 46.37 |
| PGSC0003DMT400071236 | Potato | nucleus, plastid | 32.46 | 45.15 |
| KRH30689 | Soybean | nucleus | 41.39 | 44.6 |
| Bra021640.1-P | Field mustard | nucleus | 20.04 | 44.23 |
| Solyc10g074800.1.1 | Tomato | nucleus, plastid | 31.37 | 44.17 |
| KRG98088 | Soybean | nucleus | 40.52 | 42.37 |
| CDX90224 | Canola | nucleus | 32.24 | 41.93 |
| CDY63845 | Canola | nucleus | 31.81 | 41.71 |
| AT1G30050.1 | Thale cress | nucleus | 35.08 | 41.39 |
| Bra010801.1-P | Field mustard | nucleus | 33.77 | 41.33 |
| PGSC0003DMT400071259 | Potato | extracellular, golgi | 17.21 | 40.72 |
| KRH40636 | Soybean | nucleus | 36.82 | 40.53 |
| CDX99879 | Canola | mitochondrion | 34.86 | 40.4 |
| Bra032355.1-P | Field mustard | nucleus | 34.86 | 40.3 |
| CDY26298 | Canola | nucleus | 34.64 | 39.85 |
| TraesCS4B01G122600.2 | Wheat | nucleus | 31.81 | 38.93 |
| KRH00520 | Soybean | nucleus | 35.95 | 38.92 |
| CDY11166 | Canola | cytosol | 13.29 | 38.61 |
| CDY11165 | Canola | cytosol | 1.53 | 36.84 |
| KRH64858 | Soybean | nucleus | 30.5 | 36.65 |
| KRH09568 | Soybean | nucleus | 30.28 | 36.29 |
| TraesCS1B01G313300.1 | Wheat | nucleus | 29.85 | 23.62 |
| TraesCS2B01G079600.1 | Wheat | cytosol, nucleus, plastid | 16.56 | 23.17 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G146700.2 | EnsemblPlantsGene:TraesCS1B01G146700 | ncoils:Coil | PANTHER:PTHR31016 | PANTHER:PTHR31016:SF6 | SEG:seg |
| MapMan:20.2.4.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:206426854..206430986
Molecular Weight (calculated)
50446.0 Da
IEP (calculated)
9.958
GRAVY (calculated)
-0.784
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRITYRGCL PGNLLRLGAK SRSTANASRR HYKTRTLTPS ETHRSAAATA MAYRRKPQSS FEHHHHHPQP ASPPSPPQDS LAAQAMRASA AHRDASSLSS
101: AYSSSAASAA AAARRSHEPS VSTPSPDSSS YGYTSMKSLN EAKYGFWGTL ARKAKSLIDE DGSPGQYDSP TRQQPPRDGT SPAIHRQHLQ QPAPETWKSE
201: TPPSQKRSEA LASSLNYIGG TIKSALEEGR TIVETKTADI IQETRKLNIR RKGAGSNPQG ETSHKFAHRN FPQNPLDYET QLKASRDVAN AMSAKAKLLL
301: RELKTVKADL AFAKERCAQL EDENKMLREN QDNGDNPEDD DLIRLQLETL LAEKARLAHE NSVYARENRF LREIVEYHQL TMQDVIYVDE GIEEVTEVYP
401: TQVLPPVSAR TGPGLGRAST PVTLKHVNSS LASTSTLLEP SLVVPVSPKT LSRASSQSK
101: AYSSSAASAA AAARRSHEPS VSTPSPDSSS YGYTSMKSLN EAKYGFWGTL ARKAKSLIDE DGSPGQYDSP TRQQPPRDGT SPAIHRQHLQ QPAPETWKSE
201: TPPSQKRSEA LASSLNYIGG TIKSALEEGR TIVETKTADI IQETRKLNIR RKGAGSNPQG ETSHKFAHRN FPQNPLDYET QLKASRDVAN AMSAKAKLLL
301: RELKTVKADL AFAKERCAQL EDENKMLREN QDNGDNPEDD DLIRLQLETL LAEKARLAHE NSVYARENRF LREIVEYHQL TMQDVIYVDE GIEEVTEVYP
401: TQVLPPVSAR TGPGLGRAST PVTLKHVNSS LASTSTLLEP SLVVPVSPKT LSRASSQSK
001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K
Arabidopsis Description
At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.