Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005657.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30530.1 | Bra005657.1-P | AT5G01970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29667 | Canola | cytosol | 36.54 | 65.52 |
| Bra022806.1-P | Field mustard | plastid | 68.27 | 42.26 |
| AT2G30530.1 | Thale cress | nucleus | 67.79 | 38.01 |
| Solyc09g055590.2.1 | Tomato | nucleus | 34.13 | 37.37 |
| Bra005657.1-P | Field mustard | mitochondrion | 21.15 | 28.03 |
| VIT_06s0004g08310.t01 | Wine grape | mitochondrion | 51.44 | 25.48 |
| Zm00001d010455_P013 | Maize | plastid | 45.19 | 25.13 |
| KRH30689 | Soybean | nucleus | 50.48 | 24.65 |
| KRG98088 | Soybean | nucleus | 50.96 | 24.15 |
| Os05t0315200-01 | Rice | plasma membrane | 46.63 | 23.15 |
| Bra032355.1-P | Field mustard | nucleus | 43.75 | 22.92 |
| Bra010801.1-P | Field mustard | nucleus | 40.38 | 22.4 |
| GSMUA_Achr3P09690_001 | Banana | mitochondrion | 45.19 | 22.22 |
| TraesCS1D01G124900.2 | Wheat | nucleus | 43.75 | 21.02 |
| TraesCS1A01G128300.1 | Wheat | cytosol, plastid | 43.27 | 20.79 |
| GSMUA_Achr8P21430_001 | Banana | mitochondrion | 45.19 | 20.61 |
| TraesCS1B01G146700.2 | Wheat | mitochondrion | 44.23 | 20.04 |
| OQU77734 | Sorghum | nucleus, plastid | 23.08 | 16.38 |
| Bra000862.1-P | Field mustard | nucleus, plastid | 25.48 | 16.16 |
Protein Annotations
Description
AT2G30530 (E=7e-035) | unknown protein
Coordinates
chrA04:+:13600727..13601854
Molecular Weight (calculated)
23199.7 Da
IEP (calculated)
6.679
GRAVY (calculated)
-0.485
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MCNNISGTLT LPSSDKECQQ VLEDHNVPSS GTKEAGHTGR RKTENPSLQR SLDAITSSLN YIGTAVEEGI TSVENRTAGI IQETRKKIKK KPSLQNPEIQ
101: ADLEIQLKVS RDVAMAMAAK AKLLLRELKM VRLQLETLLA EKARLAHENS IYTRENFCLR GVVEYHQLTM QDVVHFDEKT EEVTEVYPVN VTSVSSSSSS
201: NPQVLEFK
101: ADLEIQLKVS RDVAMAMAAK AKLLLRELKM VRLQLETLLA EKARLAHENS IYTRENFCLR GVVEYHQLTM QDVVHFDEKT EEVTEVYPVN VTSVSSSSSS
201: NPQVLEFK
001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K
Arabidopsis Description
At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.