Factsheet for VIT_06s0004g08310.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0056g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30530.1	VIT_08s0056g00430.t01	AT5G01970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g055590.2.1	Tomato	nucleus	28.57	63.16
CDY23991	Canola	plastid	45.24	59.19
Bra022806.1-P	Field mustard	plastid	44.76	55.95
CDX84826	Canola	plastid	45.0	55.92
Zm00001d010455_P013	Maize	plastid	48.57	54.55
VIT_08s0056g00430.t01	Wine grape	nucleus	54.76	53.86
AT2G30530.1	Thale cress	nucleus	47.38	53.64
KRH30689	Soybean	nucleus	54.05	53.29
KRG98088	Soybean	nucleus	54.05	51.71
Bra021640.1-P	Field mustard	nucleus	25.48	51.44
Os05t0315200-01	Rice	plasma membrane	50.71	50.84
OQU77734	Sorghum	nucleus, plastid	34.76	49.83
GSMUA_Achr3P09690_001	Banana	mitochondrion	48.81	48.46
TraesCS1D01G124900.2	Wheat	nucleus	49.29	47.81
GSMUA_Achr8P21430_001	Banana	mitochondrion	51.67	47.59
TraesCS1A01G128300.1	Wheat	cytosol, plastid	48.57	47.11
CDY29667	Canola	cytosol	12.86	46.55
TraesCS1B01G146700.2	Wheat	mitochondrion	49.52	45.32
VIT_07s0104g00500.t01	Wine grape	nucleus	22.62	27.86

Protein Annotations

EntrezGene:100250213	wikigene:100250213	MapMan:20.2.4.4	EMBL:AM480448	ProteinID:CAN64157	ProteinID:CAN64157.1
ProteinID:CBI15793	ProteinID:CBI15793.3	ncoils:Coil	UniProt:D7SJG7	EMBL:FN594951	EntrezGene:LOC100250213
wikigene:LOC100250213	PANTHER:PTHR31016	PANTHER:PTHR31016:SF3	TIGR:TC54747	TIGR:TC67495	UniParc:UPI00015C7EC8
ArrayExpress:VIT_06s0004g08310	EnsemblPlantsGene:VIT_06s0004g08310	EnsemblPlants:VIT_06s0004g08310.t01	unigene:Vvi.12261	RefSeq:XP_002264084	RefSeq:XP_002264084.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:9119929..9133153

Molecular Weight (calculated)

46140.9 Da

IEP (calculated)

6.716

GRAVY (calculated)

-0.731

Length

420 amino acids

Sequence
(BLAST)

001: MAAYRRRLGT SRASAIEDDE ADSSSSSLAA KAIRASSAHR DSSLSSAYGL SPSSTPPPPS KDSTSYEYTS MKSSNESKYG FWGALARKAK AIIEDDNEAQ
101: QPEAPGRTSR QGPGTVTGQH HNQYHSPEGH QKTGAPKIQK GMDVIASSLN YIGGTIGNAF EEGRTIVENR TADIIQETRK LHIRKKGSGS EPKHQATNIY
201: TRKQTSMQAQ MEPQLQADQE IQLKASRDVA MAMAAKAKLL LRELKTVKAD LAFAKERCAQ LEEENRILRE HHEKGDNPED DDLIRLQLET LLAEKARLAQ
301: ENSVYARENR FLREIVEYHQ LTMQDVIYLD ERTEEVTEVY PIKVPTVNNL HSVATTLPPL ASSLPFEGGP KTSPQGIQHV STAPVPPQAL AEISQSVASQ
401: NLHIPVPVAE DSKRDSNPSA

Best Arabidopsis Sequence Match ( AT2G30530.1 )
(BLAST)

001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K

Arabidopsis Description

At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.